SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G24590 | AT | Annotation by Michelle Graham. TAIR10: plastidic type i signal peptidase 1 | chr3:8970694-8972020 FORWARD LENGTH=291 | SoyBase | E_val: 6.00E-114 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:0051607 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to virus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009526 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid envelope | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0008233 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidase activity | SoyBase | N/A | ISS |
| GO:0008236 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity | SoyBase | N/A | ISS |
| KOG0171 | KOG | Mitochondrial inner membrane protease, subunit IMP1 | JGI | ISS | |
| PTHR12383 | Panther | PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED | JGI | ISS | |
| PTHR12383:SF1 | Panther | MITOCHONDRIAL INNER MEMBRANE PROTEASE | JGI | ISS | |
| PF10502 | PFAM | Peptidase S26 | JGI | ISS | |
| UniRef100_G7L8W8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast processing peptidase n=1 Tax=Medicago truncatula RepID=G7L8W8_MEDTR | SoyBase | E_val: 4.00E-122 | ISS |
| UniRef100_I1KQ16 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQ16_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g04250 not represented in the dataset |
Glyma08g04250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g35480 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g038100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g04250.1 sequence type=CDS gene model=Glyma08g04250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTTCTCTCTCCGTTTTCCCATCACTCCCATCGCTTCAAAACCCTAACTTGAGCCAACCCAATTTCTTCAATTTCCGCTTACCGTCGCTCTGTCACCGTCCCCTCGTCAAAAGCACTGCAACTTTTCACCGTAGAATCCTCTGCAAAGCCTTCAGAGATTCCGGCGAGGACATCAAGGCGGTGCTCAAGTCCGACGACGGTGGTGGCAGCGGCGACGGCGGCGGCGACGGTGGGGGTGGGGGTGACCGGGATGCGGAGAAGAAAGAAGGGCCCTTGCCGGAATGGTTGAATTTCAGTTCTGATGACGCAAAAACGGTGCTTGTGGCTCTGGCAATTTCGCTTGCGTTTCGAACGTTCGTGGCGGAGCCGAGGTACATTCCTTCGCTGTCAATGTATCCTACATTTGATGTTGGAGATCGAATTGTTGCTGAGAAGGTTTCATACTATTTTAGAAAACCATGTGCAAGTGACATAGTGATATTTAAAAGCCCTCCGGTGCTTCAAGAAGTTGGATATAGCGATGATGATGTTTTTATAAAGCGTGTGGTTGCAAAGGCAGGTGATATTGTGGAGGTTCGTAAAGGGCATCTTGTAGTTAATGGGGTTGAGAGGAATGAAGAGTACATCCTTGAACCACCTGCTTATGAGATGAAACCCACACGTGTGCCAGAGAACTACGTCTTTGTAATGGGAGACAACCGCAATAACAGCTATGACTCCCATGTGTGGGGTCCCCTGCCAGCCAAGAATATCATAGGTAGATCAGTATTTCGCTATTGGCCACCAAATAGAATTGCTGGCACAGTTTCTAAGGAAACTTGCAGTGTTGAAACCACGCAGACGCAGGAGAGTGCGGAGACTGCTCTACCATCTCAATGA
>Glyma08g04250.1 sequence type=predicted peptide gene model=Glyma08g04250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPSLSVFPSLPSLQNPNLSQPNFFNFRLPSLCHRPLVKSTATFHRRILCKAFRDSGEDIKAVLKSDDGGGSGDGGGDGGGGGDRDAEKKEGPLPEWLNFSSDDAKTVLVALAISLAFRTFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYFRKPCASDIVIFKSPPVLQEVGYSDDDVFIKRVVAKAGDIVEVRKGHLVVNGVERNEEYILEPPAYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAGTVSKETCSVETTQTQESAETALPSQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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