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Report for Sequence Feature Glyma08g04201

Feature Type:gene_model
Chromosome:Gm08
Start:2958146
stop:2962267
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g04201
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G32230AT Annotation by Michelle Graham. TAIR10: proteinaceous RNase P 1 | chr2:13679608-13681756 REVERSE LENGTH=572 SoyBaseE_val: 2.00E-167ISS
GO:0006855GO-bp Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport SoyBaseN/AISS
GO:0008033GO-bp Annotation by Michelle Graham. GO Biological Process: tRNA processing SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004526GO-mf Annotation by Michelle Graham. GO Molecular Function: ribonuclease P activity SoyBaseN/AISS
GO:0015238GO-mf Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity SoyBaseN/AISS
GO:0015297GO-mf Annotation by Michelle Graham. GO Molecular Function: antiporter activity SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
UniRef100_G7L890UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7L890_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002338880UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338880 related cluster n=1 Tax=unknown RepID=UPI0002338880 SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g04201
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g04201 not represented in the dataset
Glyma08g04201 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g04201
ParalogEvidenceComments
Glyma05g35530 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g04201 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g037600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g04201
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma08g04201
>Glyma08g04201.2   sequence type=transcript   gene model=Glyma08g04201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAGCATATAATTCAAAAGATGATCTATATATTAAAAATGATGTAATGTCAAAAAATATAAAACGTAGTATAAATGTCAGATTGACCAGACGATAAGGGATCGAAATGTCTGTGTTTCATAGATTACCACTGCCAGTGCGAAATTAATTTGTTACATGCGCATAATAATCCAGGTCCGGGGGCAGTGGAAAAGAAAATACAGAAATAAAACAAAACAAAAAGCATATCTATCTAAGAGTAGAGAATTAGCGGCAGCACATGATACGGTGATTGATGGCCCCCTTTACCTTTACCCTCGACTTCAACACTCTGCAACTTCAACTTCGTCACTCTCTGTTTTTCTCTAAACCAAAGCTTTGTCGTGTCTATCATCCTCGCCCTTCAACCAACATCATCACTTTCAGCTTCATCCAAAGAACACAAACTGCAACTAAATATTCTTCTTCACTTGAAATCGTGACCAAGAGAGCCCCTCCTGCTTCATTCGAACCAAAAGCTGGCATTAGTAGCACTAGCAGCAGTTCCGAGGTTAGTGAGAGAGTGAAGAAGAAGAAAAAGAAGAAGAAGAATAAGGATAAGGATTGTCCTGAAGTGAAGTTGAAGAATGCTTTGGATATGTGTTCTAAAAGAGGTGACGTTATGGGAGCATTATCCTTATATGACTCAGCAATCTCAGAGGGTGTCAAACTGGGTCAGCACCACTACACTGTGTTGTTGTATCTTTGTTCATCTGCAGCTGTTGGTGTTGTTCGACCAGCTAAAAGTGGAAGTGGTGCTAGAACTTTGAACTCACATGTTTACTCTAATGAAGTTCCCAATGAGGGCACACATTTTGATTTGGATGGCAAAGCTGAGTTAAATTCTGATTTGAATTCTACCGAGAAGGATGAGATATTATTGGTGAGTGAGGATGTCAAGAGATATGCACTGCAGAGAGGGTTTGAAGTGTATCAGAATATGTGTTTGGATAAGGTTCAAATGAATGAGGCCGCGTTGACGGCCGTGGCTCGAATGGCCATGTCCATGGGCGATGGTGACAGAGCTTTTGAGATGGTGAGGCAGATGAAGGACTTGGGGATAAGTCCTAGGTTAAGGTCTTATGGTCCTGCTTTGTTCACCTTTTGCAATAATGGGGAAATAGATAAGGCATTTGCTGTTGAAAAGCACATGCTACAACATGGTGTTTACCCTGAAGAGCCTGAGTTGGAGGCTCTCTTGAGGGTGAGTGTGGGAGCTGGAAATAGTGATAAGGTTTACTATGTGTTGCATAAACTAAGAAGTATTGTGAGGAAAGTGTCACCGACTACTTCGTCTTTGATTGTTGATTGGTTTAAGAGCAAGCAGGCTTCAAGAGTTGGAAAGAGAAAATGGGATGAGAGATTAATAAGGGAAGCAATAGAAAATAATGGTGGAGGCTGGCATGGACAAGGGTGGTTGGGTAAGGGGAAATGGGAAGCTGTTCATACAACTATTGGAAAGGATGGAATGTGCAAATGCTGTCAGGTGCAGTTGACAACTATTGATCTTGATCCTGTTGAAACTGAGAATTTTGCCAAGTCGGTTGCATCCTTAGCTGTAATGAGAGAAAAAGGGTCAAACTTCCAGAAATTTCAAAAATGGCTTGACTACTCTGGACCTTTTGAAGCAGTGGTAGATGCTGCAAATGTTGGTCTTTTCGGCCAAGGGAGGTTCATGCCACACAAGATCAATGCCGTTGCCAATGAAATACGCCAAAGGCTCCCTTCAAAGAAGTTTCCACTTATCATTTTGCATAATAAACGTATCAAGGGAGACAAAATGGATGAACCAATCAATAGGGCATTAATTGATAAGTGGAATAATGCTGATGCACTCTATGCAACACCTACTGGATCAAATGATGATTGGTACTGGTTGTATGCAGCTATAAAATTTAGATGCTTACTTGTTACCAATGATGAGATGAGAGATCATCTATTTCAACTTTTGGGAAATGACTTTTTCCCCAAGTGGAAAGAAAGGCATCAGGTACGCTTCAGTTTCTCTGATACTGGTAGTCCAGTGTTTCACATGCCCCCTCCTTGTTCTGTTGTTATTCAGGAATCAGAGGAAGGCCACTGGCATATTCCAATTGATGCAGAACTTAATGATGAATCAGAAAGAAGATGGTTGTGCATTACCCGCGCTAAATTAGATGTGGTTTCCAAAGATTCTTCAACATCTAAAGACTCTAAACCTTTGCAAAAAGGAGAATGTGCAAGATCAGCTACTAGAAATGCGTCTGCAAAGGAGTCGCAACATCAGAATCTTGTCAACCACAAAGAAAAAAAGGAAACACCTCAAGAATTGTATAAAAATGTTAGAGATATTTTTTTAGAATCAGTATCCTCAGATAAAAATAACTCAATATTGTCTGACATTGAGGCTGCAGAGTTGATTGGTGGTTGTACCATTGATTTTCAGATATAGAGTTCCCTTTGTCTTGCTGATTATCTTGAGCTATACCCTGGAAAATTATCATATTGGTCTGGCGTGAAGCTCCAATATAGTTTTATATTGCAGAGAGAAATATAAAG
Coding sequences of Glyma08g04201
>Glyma08g04201.1   sequence type=CDS   gene model=Glyma08g04201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCCCTTTACCTTTACCCTCGACTTCAACACTCTGCAACTTCAACTTCGTCACTCTCTGTTTTTCTCTAAACCAAAGCTTTGTCGTGTCTATCATCCTCGCCCTTCAACCAACATCATCACTTTCAGCTTCATCCAAAGAACACAAACTGCAACTAAATATTCTTCTTCACTTGAAATCGTGACCAAGAGAGCCCCTCCTGCTTCATTCGAACCAAAAGCTGGCATTAGTAGCACTAGCAGCAGTTCCGAGGTTAGTGAGAGAGTGAAGAAGAAGAAAAAGAAGAAGAAGAATAAGGATAAGGATTGTCCTGAAGTGAAGTTGAAGAATGCTTTGGATATGTGTTCTAAAAGAGGTGACGTTATGGGAGCATTATCCTTATATGACTCAGCAATCTCAGAGGGTGTCAAACTGGGTCAGCACCACTACACTGTGTTGTTGTATCTTTGTTCATCTGCAGCTGTTGGTGTTGTTCGACCAGCTAAAAGTGGAAGTGGTGCTAGAACTTTGAACTCACATGTTTACTCTAATGAAGTTCCCAATGAGGGCACACATTTTGATTTGGATGGCAAAGCTGAGTTAAATTCTGATTTGAATTCTACCGAGAAGGATGAGATATTATTGGTGAGTGAGGATGTCAAGAGATATGCACTGCAGAGAGGGTTTGAAGTGTATCAGAATATGTGTTTGGATAAGGTTCAAATGAATGAGGCCGCGTTGACGGCCGTGGCTCGAATGGCCATGTCCATGGGCGATGGTGACAGAGCTTTTGAGATGGTGAGGCAGATGAAGGACTTGGGGATAAGTCCTAGGTTAAGGTCTTATGGTCCTGCTTTGTTCACCTTTTGCAATAATGGGGAAATAGATAAGGCATTTGCTGTTGAAAAGCACATGCTACAACATGGTGTTTACCCTGAAGAGCCTGAGTTGGAGGCTCTCTTGAGGGTGAGTGTGGGAGCTGGAAATAGTGATAAGGTTTACTATGTGTTGCATAAACTAAGAAGTATTGTGAGGAAAGTGTCACCGACTACTTCGTCTTTGATTGTTGATTGGTTTAAGAGCAAGCAGGCTTCAAGAGTTGGAAAGAGAAAATGGGATGAGAGATTAATAAGGGAAGCAATAGAAAATAATGGTGGAGGCTGGCATGGACAAGGGTGGTTGGGTAAGGGGAAATGGGAAGCTGTTCATACAACTATTGGAAAGGATGGAATGTGCAAATGCTGTCAGGTGCAGTTGACAACTATTGATCTTGATCCTGTTGAAACTGAGAATTTTGCCAAGTCGGTTGCATCCTTAGCTGTAATGAGAGAAAAAGGGTCAAACTTCCAGAAATTTCAAAAATGGCTTGACTACTCTGGACCTTTTGAAGCAGTGGTAGATGCTGCAAATGTTGGTCTTTTCGGCCAAGGGAGGTTCATGCCACACAAGATCAATGCCGTTGCCAATGAAATACGCCAAAGGCTCCCTTCAAAGAAGTTTCCACTTATCATTTTGCATAATAAACGTATCAAGGGAGACAAAATGGATGAACCAATCAATAGGGCATTAATTGATAAGTGGAATAATGCTGATGCACTCTATGCAACACCTACTGGATCAAATGATGATTGGTACTGGTTGTATGCAGCTATAAAATTTAGATGCTTACTTGTTACCAATGATGAGATGAGAGATCATCTATTTCAACTTTTGGGAAATGACTTTTTCCCCAAGTGGAAAGAAAGGCATCAGGTACGCTTCAGTTTCTCTGATACTGGTAGTCCAGTGTTTCACATGCCCCCTCCTTGTTCTGTTGTTATTCAGCAGGAATCAGAGGAAGGCCACTGGCATATTCCAATTGATGCAGAACTTAATGATGAATCAGAAAGAAGATGGTTGTGCATTACCCGCGCTAAATTAGATGTGGTTTCCAAAGATTCTTCAACATCTAAAGACTCTAAACCTTTGCAAAAAGGAGAATGTGCAAGATCAGCTACTAGAAATGCGTCTGCAAAGGAGTCGCAACATCAGAATCTTGTCAACCACAAAGAAAAAAAGGAAACACCTCAAGAATTGTATAAAAATGTTAGAGATATTTTTTTAGAATCAGTATCCTCAGATAAAAATAACTCAATATTGTCTGACATTGAGGCTGCAGAGTTGATTGGTGGTTGTACCATTGATTTTCAGATATAG

>Glyma08g04201.2   sequence type=CDS   gene model=Glyma08g04201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCCCTTTACCTTTACCCTCGACTTCAACACTCTGCAACTTCAACTTCGTCACTCTCTGTTTTTCTCTAAACCAAAGCTTTGTCGTGTCTATCATCCTCGCCCTTCAACCAACATCATCACTTTCAGCTTCATCCAAAGAACACAAACTGCAACTAAATATTCTTCTTCACTTGAAATCGTGACCAAGAGAGCCCCTCCTGCTTCATTCGAACCAAAAGCTGGCATTAGTAGCACTAGCAGCAGTTCCGAGGTTAGTGAGAGAGTGAAGAAGAAGAAAAAGAAGAAGAAGAATAAGGATAAGGATTGTCCTGAAGTGAAGTTGAAGAATGCTTTGGATATGTGTTCTAAAAGAGGTGACGTTATGGGAGCATTATCCTTATATGACTCAGCAATCTCAGAGGGTGTCAAACTGGGTCAGCACCACTACACTGTGTTGTTGTATCTTTGTTCATCTGCAGCTGTTGGTGTTGTTCGACCAGCTAAAAGTGGAAGTGGTGCTAGAACTTTGAACTCACATGTTTACTCTAATGAAGTTCCCAATGAGGGCACACATTTTGATTTGGATGGCAAAGCTGAGTTAAATTCTGATTTGAATTCTACCGAGAAGGATGAGATATTATTGGTGAGTGAGGATGTCAAGAGATATGCACTGCAGAGAGGGTTTGAAGTGTATCAGAATATGTGTTTGGATAAGGTTCAAATGAATGAGGCCGCGTTGACGGCCGTGGCTCGAATGGCCATGTCCATGGGCGATGGTGACAGAGCTTTTGAGATGGTGAGGCAGATGAAGGACTTGGGGATAAGTCCTAGGTTAAGGTCTTATGGTCCTGCTTTGTTCACCTTTTGCAATAATGGGGAAATAGATAAGGCATTTGCTGTTGAAAAGCACATGCTACAACATGGTGTTTACCCTGAAGAGCCTGAGTTGGAGGCTCTCTTGAGGGTGAGTGTGGGAGCTGGAAATAGTGATAAGGTTTACTATGTGTTGCATAAACTAAGAAGTATTGTGAGGAAAGTGTCACCGACTACTTCGTCTTTGATTGTTGATTGGTTTAAGAGCAAGCAGGCTTCAAGAGTTGGAAAGAGAAAATGGGATGAGAGATTAATAAGGGAAGCAATAGAAAATAATGGTGGAGGCTGGCATGGACAAGGGTGGTTGGGTAAGGGGAAATGGGAAGCTGTTCATACAACTATTGGAAAGGATGGAATGTGCAAATGCTGTCAGGTGCAGTTGACAACTATTGATCTTGATCCTGTTGAAACTGAGAATTTTGCCAAGTCGGTTGCATCCTTAGCTGTAATGAGAGAAAAAGGGTCAAACTTCCAGAAATTTCAAAAATGGCTTGACTACTCTGGACCTTTTGAAGCAGTGGTAGATGCTGCAAATGTTGGTCTTTTCGGCCAAGGGAGGTTCATGCCACACAAGATCAATGCCGTTGCCAATGAAATACGCCAAAGGCTCCCTTCAAAGAAGTTTCCACTTATCATTTTGCATAATAAACGTATCAAGGGAGACAAAATGGATGAACCAATCAATAGGGCATTAATTGATAAGTGGAATAATGCTGATGCACTCTATGCAACACCTACTGGATCAAATGATGATTGGTACTGGTTGTATGCAGCTATAAAATTTAGATGCTTACTTGTTACCAATGATGAGATGAGAGATCATCTATTTCAACTTTTGGGAAATGACTTTTTCCCCAAGTGGAAAGAAAGGCATCAGGTACGCTTCAGTTTCTCTGATACTGGTAGTCCAGTGTTTCACATGCCCCCTCCTTGTTCTGTTGTTATTCAGGAATCAGAGGAAGGCCACTGGCATATTCCAATTGATGCAGAACTTAATGATGAATCAGAAAGAAGATGGTTGTGCATTACCCGCGCTAAATTAGATGTGGTTTCCAAAGATTCTTCAACATCTAAAGACTCTAAACCTTTGCAAAAAGGAGAATGTGCAAGATCAGCTACTAGAAATGCGTCTGCAAAGGAGTCGCAACATCAGAATCTTGTCAACCACAAAGAAAAAAAGGAAACACCTCAAGAATTGTATAAAAATGTTAGAGATATTTTTTTAGAATCAGTATCCTCAGATAAAAATAACTCAATATTGTCTGACATTGAGGCTGCAGAGTTGATTGGTGGTTGTACCATTGATTTTCAGATATAG
Predicted protein sequences of Glyma08g04201
>Glyma08g04201.1   sequence type=predicted peptide   gene model=Glyma08g04201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPFTFTLDFNTLQLQLRHSLFFSKPKLCRVYHPRPSTNIITFSFIQRTQTATKYSSSLEIVTKRAPPASFEPKAGISSTSSSSEVSERVKKKKKKKKNKDKDCPEVKLKNALDMCSKRGDVMGALSLYDSAISEGVKLGQHHYTVLLYLCSSAAVGVVRPAKSGSGARTLNSHVYSNEVPNEGTHFDLDGKAELNSDLNSTEKDEILLVSEDVKRYALQRGFEVYQNMCLDKVQMNEAALTAVARMAMSMGDGDRAFEMVRQMKDLGISPRLRSYGPALFTFCNNGEIDKAFAVEKHMLQHGVYPEEPELEALLRVSVGAGNSDKVYYVLHKLRSIVRKVSPTTSSLIVDWFKSKQASRVGKRKWDERLIREAIENNGGGWHGQGWLGKGKWEAVHTTIGKDGMCKCCQVQLTTIDLDPVETENFAKSVASLAVMREKGSNFQKFQKWLDYSGPFEAVVDAANVGLFGQGRFMPHKINAVANEIRQRLPSKKFPLIILHNKRIKGDKMDEPINRALIDKWNNADALYATPTGSNDDWYWLYAAIKFRCLLVTNDEMRDHLFQLLGNDFFPKWKERHQVRFSFSDTGSPVFHMPPPCSVVIQQESEEGHWHIPIDAELNDESERRWLCITRAKLDVVSKDSSTSKDSKPLQKGECARSATRNASAKESQHQNLVNHKEKKETPQELYKNVRDIFLESVSSDKNNSILSDIEAAELIGGCTIDFQI*

>Glyma08g04201.2   sequence type=predicted peptide   gene model=Glyma08g04201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPFTFTLDFNTLQLQLRHSLFFSKPKLCRVYHPRPSTNIITFSFIQRTQTATKYSSSLEIVTKRAPPASFEPKAGISSTSSSSEVSERVKKKKKKKKNKDKDCPEVKLKNALDMCSKRGDVMGALSLYDSAISEGVKLGQHHYTVLLYLCSSAAVGVVRPAKSGSGARTLNSHVYSNEVPNEGTHFDLDGKAELNSDLNSTEKDEILLVSEDVKRYALQRGFEVYQNMCLDKVQMNEAALTAVARMAMSMGDGDRAFEMVRQMKDLGISPRLRSYGPALFTFCNNGEIDKAFAVEKHMLQHGVYPEEPELEALLRVSVGAGNSDKVYYVLHKLRSIVRKVSPTTSSLIVDWFKSKQASRVGKRKWDERLIREAIENNGGGWHGQGWLGKGKWEAVHTTIGKDGMCKCCQVQLTTIDLDPVETENFAKSVASLAVMREKGSNFQKFQKWLDYSGPFEAVVDAANVGLFGQGRFMPHKINAVANEIRQRLPSKKFPLIILHNKRIKGDKMDEPINRALIDKWNNADALYATPTGSNDDWYWLYAAIKFRCLLVTNDEMRDHLFQLLGNDFFPKWKERHQVRFSFSDTGSPVFHMPPPCSVVIQESEEGHWHIPIDAELNDESERRWLCITRAKLDVVSKDSSTSKDSKPLQKGECARSATRNASAKESQHQNLVNHKEKKETPQELYKNVRDIFLESVSSDKNNSILSDIEAAELIGGCTIDFQI*






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