Glyma08g03980 - SoyBase

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Report for Sequence Feature Glyma08g03980

Feature Type:	gene_model
Chromosome:	Gm08
Start:	2816264
stop:	2820333
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g03980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G51130	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr5:20781896-20783901 FORWARD LENGTH=318	SoyBase	E_val: 5.00E-122	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0006479	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein methylation	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0016571	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone methylation	SoyBase	N/A	ISS
GO:0016579	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein deubiquitination	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008276	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein methyltransferase activity	SoyBase	N/A	ISS
KOG2899	KOG	Predicted methyltransferase	JGI		ISS
PTHR12315	Panther	BICOID-INTERACTING PROTEIN RELATED	JGI		ISS
PF02390	PFAM	Putative methyltransferase	JGI		ISS
PF06859	PFAM	Bicoid-interacting protein 3 (Bin3)	JGI		ISS
UniRef100_G7L862	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 7SK snRNA methylphosphate capping enzyme n=1 Tax=Medicago truncatula RepID=G7L862_MEDTR	SoyBase	E_val: 1.00E-155	ISS
UniRef100_I1KPY6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KPY6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g03980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g03980 not represented in the dataset	Glyma08g03980 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g03980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g035500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g03980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g03980

Limit To All Plant Sequences

>Glyma08g03980.1   sequence type=CDS   gene model=Glyma08g03980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGCCAGAAGCAGAACAGTAAAAAGCGGAAACAAGTTTTCCCATACGGCAACTACAAGAGCTACTATGGCTATCGAATTGGTCAAGGCGTGGATGAGGACCCTCGATTGAAGGTGCTGAGGAAGGAATGGTTTGAAGGCAAGGACTGTCTTGATATTGGCTGCAACAATGGGATCATCACCATACAGATTGCACAGAAGTTTTGCTGTCAGAGAATTCTCGGAGTTGACATTGATTCTGATCGAGTTGAGGATGCATATTGGAATCTCAGAAAAACTGTTAGGTTGAAATCTACAGGGAATAAACCTGTGAAAGCCTCCAAACTTCAGGACAAGGACCATGCTGATGATTCAGAGAACAGTGTTACTACTTTGTTGAATGTTAAAACGGAGGAGATTTCAAAGGAACATTCTTCTTCAGAGCAAATTGATCTTCTTAAAATAGTTTCGTTTAAACGAGAAAATTTTGTTCAGACTCAACACCCACCAGGAAAGCAGTATGATACAATTCTTTGTTTGAGTGTATCAAAGTGGATACATCTAAATTGGGGGGATGATGGCTTAATTACTTTATTTGCAGAGGTTTGGAAACTGCTCCGTCCAGGTGGCATTTTTGTGCTGGAACCTCAGCCATGGAAGTCATATGAAAGCAATCGTAATGTCTCAGAGACCACTGCTGCCAACTACCGTAATATTATGATTCGACCAGAACAGTTTCAGGAAATATTACTAGATAAGATTGGATTTCGAACAGTTGAAGATATCACTTCAGGTTTGACAGATAGCAAGACTGGTTTCAACAGGCCAATTCTGGTTTTTTGCAAATGA

Predicted protein sequences of Glyma08g03980

Limit To All Plant Sequences

>Glyma08g03980.1   sequence type=predicted peptide   gene model=Glyma08g03980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESQKQNSKKRKQVFPYGNYKSYYGYRIGQGVDEDPRLKVLRKEWFEGKDCLDIGCNNGIITIQIAQKFCCQRILGVDIDSDRVEDAYWNLRKTVRLKSTGNKPVKASKLQDKDHADDSENSVTTLLNVKTEEISKEHSSSEQIDLLKIVSFKRENFVQTQHPPGKQYDTILCLSVSKWIHLNWGDDGLITLFAEVWKLLRPGGIFVLEPQPWKSYESNRNVSETTAANYRNIMIRPEQFQEILLDKIGFRTVEDITSGLTDSKTGFNRPILVFCK*

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