Glyma08g03970 - SoyBase

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Report for Sequence Feature Glyma08g03970

Feature Type:	gene_model
Chromosome:	Gm08
Start:	2808395
stop:	2814813
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g03970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67280	AT	Annotation by Michelle Graham. TAIR10: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein \| chr1:25188563-25190547 REVERSE LENGTH=350	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0010319	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: stromule	SoyBase	N/A	ISS
GO:0031977	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen	SoyBase	N/A	ISS
GO:0004462	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lactoylglutathione lyase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG2943	KOG	Predicted glyoxalase	JGI		ISS
PTHR10374	Panther	LACTOYLGLUTATHIONE LYASE	JGI		ISS
PTHR10374:SF0	Panther	LACTOYLGLUTATHIONE LYASE (GLYOXALASE I)	JGI		ISS
PF00903	PFAM	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	JGI		ISS
UniRef100_G7L865	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lactoylglutathione lyase n=1 Tax=Medicago truncatula RepID=G7L865_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KPY5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KPY5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g03970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g03970

Paralog	Evidence	Comments
Glyma05g35700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g03970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g035400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g03970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g03970

Limit To All Plant Sequences

>Glyma08g03970.1   sequence type=CDS   gene model=Glyma08g03970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTATTGGTGAGACTGGTTCCCATGGCTTCTTCTTCAATACGACCCGCTCTCTCAACACCTTCCTCCTTTTCTCTCTTCAGCCCTTCTCGCCGTATCTCTTTCTCCCATCTTCCCTCTCCCTCTGTGTCTCAATCCAATAGTTTTGGCCTCAAAGCTTCCAGAGTGTTGAGACAATATGGTAACTCCACGAGAATCATGGCATCAGGGGACTTGTCTCATTCAGTTGCGGCTGCTTCACCAGAAAATGTGCTTGAGTGGGTCAAACAGGACAAGAGAAGAATGCTTCATGTTGTATATCGTGTTGGGGACCTGGACAGGACCATAAAGTTTTATACAGAGTGCCTAGGAATGAAGCTCCTCAGAAAGAGGGACATACCAGAGGAGAAATATACTAATGCCTTTCTTGGATATGGGCCCGAAGACTCACACTTTGTTATTGAACTGACATACAATTATGGAGTTGACAAGTATGATATTGGAACTGGATTTGGCCATTTTGGTATTGCTGTTGATGATGTTGCAAAAGCAGTGGAGCTAATAAGAGCTAAGGGTGGCAAAATAACTAGGGAGCCTGGTCCTGTCAAGGGAGGGCGTTCAGTAATTGCATTTATTGAAGATCCTGATGGTTACAAATTTGAACTTATAGAAAGAGGTCCCACTCCTGAACCCTTGTGCCAAGTAATGCTTCGAGTGGGTGATCTTAATCGTTCAATAGAATTTTACGAGAAGGCATTTGGTATGGAGCTGCTTCGTACACGAGACAATCCAGAATACAAGTACACCATAGCAATGCTGGGTTATGGTCCAGAAGATAAAAGCACTGTTCTGGAGTTGACTTACAATTATGGAGTCACTGAATACGATAAAGGAAATGCTTATGCTCAGATTGCAATAGGCACAGATGATGTGTACAAAACTGCAGAAGCAATTAAACTAGCTGGAGGAAAGATTACTCGGGAACCTGGACCATTACCTGGTATCAACACAAAAATTACTGCATGCTTGGATCCAGATGGCTGGAAGTCGGTTTTTGTAGATAATGTTGATTTTCTAAAGGAGTTGGAATAG

Predicted protein sequences of Glyma08g03970

Limit To All Plant Sequences

>Glyma08g03970.1   sequence type=predicted peptide   gene model=Glyma08g03970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLVRLVPMASSSIRPALSTPSSFSLFSPSRRISFSHLPSPSVSQSNSFGLKASRVLRQYGNSTRIMASGDLSHSVAAASPENVLEWVKQDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKAVELIRAKGGKITREPGPVKGGRSVIAFIEDPDGYKFELIERGPTPEPLCQVMLRVGDLNRSIEFYEKAFGMELLRTRDNPEYKYTIAMLGYGPEDKSTVLELTYNYGVTEYDKGNAYAQIAIGTDDVYKTAEAIKLAGGKITREPGPLPGINTKITACLDPDGWKSVFVDNVDFLKELE*

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