SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20010 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF810) | chr2:8637977-8641184 REVERSE LENGTH=952 | SoyBase | E_val: 0 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0007154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell communication | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0048527 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root development | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0052542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF05664 | PFAM | Protein of unknown function (DUF810) | JGI | ISS | |
| UniRef100_UPI000233953C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233953C related cluster n=1 Tax=unknown RepID=UPI000233953C | SoyBase | E_val: 0 | ISS |
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Glyma08g03890 not represented in the dataset |
Glyma08g03890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g35760 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g034800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g03890.2 sequence type=CDS gene model=Glyma08g03890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCACGAGCACGAGCATGTTGTGGAGTTCGAGGACATTCTTCCTTCCCCCTTCGCTCCAAACTTATCAGAATCGGAGCTCCGGGAAACGGCCTATGAGATGCTCGTGGGGGCTTGCCGGAGTTCGGGGCCCAAGCCGTTAACCTTCTTCTCGCACTCTGAGCAGTCTAACAGAGGAGGAACTCAGCGGATTCCGTCGCCTTCATTGTACAGGTCGCTGACTGTGACGGCGTCGTCGAGGAATGGAAGGGCGGCGACCACGGGGGAGTTGATGAGAGTGCAGATGAAGGTTACGGAACTCACTGACACTAGACTCAGGCGTGCCCTCCTCAGAGTAGCTGCAGGCCAGCTAATACAGCAGGTCAAGTGTTCAGATTTTCCTAGTGAACAAGAGTACGAGGCTTGGCTAAGGAGGAATTTGAAGGTTCTCGAAGCAGGACTCATCTTGCATCCTCGCCTGCCATTATTGGATAAGGCAGACACTTGTGTACTGCGTCTGCAACAGATCATCCATGAAGGCCTTGAGAAGCCTATGGATATTGGTAAAAACAGTGAATCAATGCATGCACTTCGCACTCTTACATGCCATTGGGCTGATGGCTTTCCACTGAACCATGGCATCTACCAAACTCTGTTAGAAGCATGTTTCCATAATAATGATGAAACCTGTGTGATACAAGAGGTTGACGAGGTCTTCGAGCTCATTAAGACGACCTGGGTTATGCTTGCAATGAATGAGATGTTGCATAATGTTTGCTTTTCCTGGGTCTTGTTTCAACGGTATGTTGCCAATGGTCAAGTGGATAACGATCTTTTGTTTGCATCGAGTAATCTGCTTGCACAAGTTGAGAATGATGCCAAGGCGATGAATGATCCGTTTATCTCAAAATCTTTGAGCTACGCATTGAATTTGATGTTAAGTTGGGCAGAAGAAAGGCTCCTTGCCTACCATGACACTTTCCATAATGGTAATATTGAATCAATGCAAAGTGTTGTTTCTCTTGCAGTATCCTCAGCAAAAATATTGGCAGGAGATATTTCTCTTGGGTGTAATAAAGAAGCTCATGTAGCCTGCACCAAAGTTGAAAATTATATTACATCATCATTGCATGCTCAGAAATTGGAGAAACTGGATCCTCGCATCAGCAAGCATGTACCTAGACAACACGATAAAGTCTTTTCAACTCTCTCCGTTCTTGCACGAGACATCAGCGAACTGGCTTTTAACGAGAAGGCAACATTTAGTCCCATACTGAAGAGGTGGCATCCACTTGCGGCTGGTGTTGCTGTTGCAACCCTTCATGTTTGTTATGGTCATGAGTTGAAGCAATATGTCAAGAGTGTTACAGAAGAACTGGTACAGATAGCGGTGGAAGATTCAGTTGACAGTGAAGATGGTGGAAAATCCGTTTTAAGGGAGATGTACCCTTATGAGGCTGAAGCTGTAATTATCAATCTGGTCAAGTCATGGATCAAGACCAGAATGGATGGACTGGAGGAGTGTGTAGACAGAAATTTACAAGAAGAGGTATGGAATCCGCGTGCAAATAAAGAGTGCTTTGCTCCTTCTGTTCTTGAGATTCTAGGAATCATAGATGACTCTCTGGAAGCGTTCTTTCTGTTGCCAATACCCATGCATGCAGCCTTGCTTCCTGAATTGATGTCTGCTCTTGACAAATCTCTCCAACAATACATTTTGAAGGCCAAATCTGGCTGTGGATCAAAATTTCATGGTGTTTTCAGGAAAAAAGGAAAGTCACAAGTGACTGATCAGAGAAGGATATTTCATCATGGAACTACAAACGTAGACAGCTCATTTGCATTACCCCAGTTTTGTGTTCGCATAAATACCATGCAGCGCATTGGCATGGGACTAAAGGTTTTGGAAAAGAGGACAATTTCCCGTCTTGGGAATTCTAAATCAACAAAAGAGTATGGTATAGAGGACAAGTTCAAGCTTTCTAAAGCTGCGTCTGTGGAAGGTATCCGTCAACTCTCTGAGGCCATGACATACAAAGTGATTTTCCAGGATCTGCGTTATGTTCTTTGGGATGGCCTGTATTTTGGTGAAGTTTCATCCACTAGAATTGAGCCTTTTCTTGAGGAGCTTAATCAATGCTTGAAGATTATTTTGTCTACTGTGCATGACAGAGTCATAACGCATGTAATTACTGAGGTGATGAAGGCTTCTTTTGATGGGTTCTTGTTGGTTTTGTTAGCTGGGGGTCCAGCACAGGGTTTACCTGCTGATTTGATAGAAAAGCAGTGTACCACTGTTAAAGAACTATTCAGTGAGCTTATTCTGGGAATGTATGGCTCTTCAGCCAAATTCCACTTGCCATTGCCAACAACATCCGGTCAGTGGAGTCCAAGAGAACCAAACACTATTCTGCGAATTTTTTGTCATCGAAGTGATAACACAGCACTAAGTTCCTTAAGAAGAACTACAACTTGCCCAAGAATATCCAACAAGGTATAA
>Glyma08g03890.2 sequence type=predicted peptide gene model=Glyma08g03890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHEHEHVVEFEDILPSPFAPNLSESELRETAYEMLVGACRSSGPKPLTFFSHSEQSNRGGTQRIPSPSLYRSLTVTASSRNGRAATTGELMRVQMKVTELTDTRLRRALLRVAAGQLIQQVKCSDFPSEQEYEAWLRRNLKVLEAGLILHPRLPLLDKADTCVLRLQQIIHEGLEKPMDIGKNSESMHALRTLTCHWADGFPLNHGIYQTLLEACFHNNDETCVIQEVDEVFELIKTTWVMLAMNEMLHNVCFSWVLFQRYVANGQVDNDLLFASSNLLAQVENDAKAMNDPFISKSLSYALNLMLSWAEERLLAYHDTFHNGNIESMQSVVSLAVSSAKILAGDISLGCNKEAHVACTKVENYITSSLHAQKLEKLDPRISKHVPRQHDKVFSTLSVLARDISELAFNEKATFSPILKRWHPLAAGVAVATLHVCYGHELKQYVKSVTEELVQIAVEDSVDSEDGGKSVLREMYPYEAEAVIINLVKSWIKTRMDGLEECVDRNLQEEVWNPRANKECFAPSVLEILGIIDDSLEAFFLLPIPMHAALLPELMSALDKSLQQYILKAKSGCGSKFHGVFRKKGKSQVTDQRRIFHHGTTNVDSSFALPQFCVRINTMQRIGMGLKVLEKRTISRLGNSKSTKEYGIEDKFKLSKAASVEGIRQLSEAMTYKVIFQDLRYVLWDGLYFGEVSSTRIEPFLEELNQCLKIILSTVHDRVITHVITEVMKASFDGFLLVLLAGGPAQGLPADLIEKQCTTVKELFSELILGMYGSSAKFHLPLPTTSGQWSPREPNTILRIFCHRSDNTALSSLRRTTTCPRISNKV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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