SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma08g03820): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma08g03820): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma08g03820

Feature Type:gene_model
Chromosome:Gm08
Start:2710735
stop:2711220
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g03820
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G66656AT Annotation by Michelle Graham. TAIR10: AGAMOUS-like 91 | chr3:2091262-2091798 REVERSE LENGTH=178 SoyBaseE_val: 3.00E-30ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
KOG0014 KOG MADS box transcription factor JGI ISS
PTHR11945Panther MADS BOX PROTEIN JGI ISS
PF00319PFAM SRF-type transcription factor (DNA-binding and dimerisation domain) JGI ISS
UniRef100_G7L988UniRef Annotation by Michelle Graham. Most informative UniRef hit: MADS-box transcription factor n=1 Tax=Medicago truncatula RepID=G7L988_MEDTR SoyBaseE_val: 1.00E-45ISS
UniRef100_UPI000233871CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233871C related cluster n=1 Tax=unknown RepID=UPI000233871C SoyBaseE_val: 6.00E-114ISS

Expression Patterns of Glyma08g03820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g03820 not represented in the dataset
Glyma08g03820 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g03820 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g034100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g03820
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g03820
>Glyma08g03820.1   sequence type=CDS   gene model=Glyma08g03820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCGTCGTAAGATTGAGATTACGGAGTTGAAGGACTCCAACACCAAGCAAGTTACATTTTCCAAGCGTCGAACAGGTTTGTTCAAAAAAGCAAATGAATTATCTATTTTGTGTGGAGCTGAAGTTGCTGTTGTTGTGTTCTCTCCTGGGAATAACCCTTATTCTTTTGGGCATCCAAGCGTTGATGTTGTTGCAGACAAGTTTCTTAAACAAGAGCCGAAATCAAATGATGTCCAGGGAACATCTACTGAGGTTGCTGATATGGATAGGCTCAATCAACAACTATCCGATGTTCAAAATGAAATACTTGAGGAACAAAAGAAGGCTGCAGAACTCAATGAGAGAATGAAACAAAAAGGAGTCACACAACTTTTTCAACCTAAAGAATTGCAAGGTTCAAATTTAGAGATCCAAAAGATGAAGGACTGTTATGATGCAATCGAGGTGTCAGAATATATGTTGCTCCTTGCAAAGAACCAGTAG
Predicted protein sequences of Glyma08g03820
>Glyma08g03820.1   sequence type=predicted peptide   gene model=Glyma08g03820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRRKIEITELKDSNTKQVTFSKRRTGLFKKANELSILCGAEVAVVVFSPGNNPYSFGHPSVDVVADKFLKQEPKSNDVQGTSTEVADMDRLNQQLSDVQNEILEEQKKAAELNERMKQKGVTQLFQPKELQGSNLEIQKMKDCYDAIEVSEYMLLLAKNQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo