SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G26080 | AT | Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein | chr4:13220231-13221828 REVERSE LENGTH=434 | SoyBase | E_val: 4.00E-98 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0000303 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to superoxide | SoyBase | N/A | ISS |
| GO:0006470 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: autophagy | SoyBase | N/A | ISS |
| GO:0007154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell communication | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0008219 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell death | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0009787 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009873 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of seed germination | SoyBase | N/A | ISS |
| GO:0010119 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008287 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: protein serine/threonine phosphatase complex | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004722 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0019901 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase binding | SoyBase | N/A | ISS |
| KOG0698 | KOG | Serine/threonine protein phosphatase | JGI | ISS | |
| PTHR13832 | Panther | PROTEIN PHOSPHATASE 2C | JGI | ISS | |
| PTHR13832:SF115 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00481 | PFAM | Protein phosphatase 2C | JGI | ISS | |
| UniRef100_G7L7G3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2C n=1 Tax=Medicago truncatula RepID=G7L7G3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KPX1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KPX1_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma08g03780 not represented in the dataset |
Glyma08g03780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g35830 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g033800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g03780.1 sequence type=CDS gene model=Glyma08g03780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGAGGACGAGCAACTCGAACGATTCGACTCGGAGTTCGCCTCCACGAGTTCCATTTCCTCCACCCTCAGCACCGACGATTTCCGCAACCTCACCAGCTCCGGCGACATTTCCTCCATCAGCAGCGGCTCCGGCGAGATTCCTCCCGTCGCGGTCCTCGCGCCTCCGTTTCTCTACCGCGAGGGGTCCAATGACGTCGAGACGGCGCCGGCGCCCAGGGAGAAGTGCGTGGGAAGGAGTAACAAGGGAGTGAGCTGGGGGCACACTTCTGTGATTGGGAGAAGGAAAGAGATGGAGGACGCCATCGCCGTTATTCCGGGATTCATGTCTCGCACGTGCGATCGCGTCGGGGGTTGTACGGCTCCCGGTTCTAGATCCTCCGGCGAGATCGCTCCGCTTCATTTCTTCGGCGTTTACGACGGCCACGGTGGCTCTCAGGTGGCTAAGTTTTGTGCGAAGCGGATGCACGATGTTATAGCAGAGGAATGGGACCGAGAAATAGGAGGTGCCGCTGAATGGCAGAGAAGATGGGAAGCTGTATTTGCTAACAGTTTTGAGAGGACTGATAATGAAATCCTCTCAGACGCAGTTGCACCAGAAATGGTAGGATCTACTGCCTCTGTGGTGGTTCTATCTGGTTGCCAAATTATTACATCCAACTGCGGCGACTCAAGGGTAGTTCTTTGCCGCAGGACACAAACTATCCCCTTGACAGTGGATCAGAAGCCGGATAGACAAGATGAACTCTTGAGAATTGAAGGAGGAGGAGGAAAAGTCATAAACTGGAATGGAGCTAGGGTATTTGGTGTTCTTGCCATGTCCAGGGCCATAGGTGATCGGTACTTGAGACCGTGGATTATTCCGGTGCCAGAGATAACTTTCACAGCAAGAACCGATGAGGATGAGTGCTTAGTTTTGGCAAGTGATGGACTCTGGGATGTAATGACCAATGAAGAGGTTGGAGAAGTAGCACGCCGCATTCTTAGAAGGCGTCGCAGATCCTTGTCAATGGAGGAAACATCTCCTGCACAAGTTGTTGCCGAAAGCTTGACTGAAATTGCATATGGTCGAAATAGTAAAGATAACATTTCAATCATAGTTGTTGATCTGAAATCAAAGAGAAAACGTCAGCAAAGGCCTCCTTTAATTTCCTAA
>Glyma08g03780.1 sequence type=predicted peptide gene model=Glyma08g03780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDEDEQLERFDSEFASTSSISSTLSTDDFRNLTSSGDISSISSGSGEIPPVAVLAPPFLYREGSNDVETAPAPREKCVGRSNKGVSWGHTSVIGRRKEMEDAIAVIPGFMSRTCDRVGGCTAPGSRSSGEIAPLHFFGVYDGHGGSQVAKFCAKRMHDVIAEEWDREIGGAAEWQRRWEAVFANSFERTDNEILSDAVAPEMVGSTASVVVLSGCQIITSNCGDSRVVLCRRTQTIPLTVDQKPDRQDELLRIEGGGGKVINWNGARVFGVLAMSRAIGDRYLRPWIIPVPEITFTARTDEDECLVLASDGLWDVMTNEEVGEVARRILRRRRRSLSMEETSPAQVVAESLTEIAYGRNSKDNISIIVVDLKSKRKRQQRPPLIS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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