SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G19870 | AT | Annotation by Michelle Graham. TAIR10: tRNA/rRNA methyltransferase (SpoU) family protein | chr2:8576034-8577803 FORWARD LENGTH=589 | SoyBase | E_val: 1.00E-171 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| GO:0008173 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA methyltransferase activity | SoyBase | N/A | ISS |
| KOG0838 | KOG | RNA Methylase, SpoU family | JGI | ISS | |
| PTHR12029 | Panther | RNA METHYLASE | JGI | ISS | |
| PTHR12029:SF7 | Panther | RRNA METHYLASE | JGI | ISS | |
| PF00588 | PFAM | SpoU rRNA Methylase family | JGI | ISS | |
| PF08032 | PFAM | RNA 2'-O ribose methyltransferase substrate binding | JGI | ISS | |
| UniRef100_G7L7F2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: tRNA/rRNA methyltransferase, putative n=2 Tax=Medicago truncatula RepID=G7L7F2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KPW8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KPW8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g03750 not represented in the dataset |
Glyma08g03750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g033500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g03750.1 sequence type=CDS gene model=Glyma08g03750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATACCAATATCTCCAAAGCCCAGGCATTTCCTCTCGCCGCTAAAATATCTTCGCAACCCAAATGCTTCACTTCACCCCTCGCCTTAAAGTTCCCATCTTTACCACTTGCTTCTCATCGAAACCCCATGTTAAAAACCCCCACTTCACATAAATTTGGAACCTTGGAAATGGGGAAATTAGCAAATCCCCACGGGTTGATGCTACAAATTGCTAGGAGATATTGTAGTGCAAGAAGTACTGAAAAGCAACTTCCTTGGTTAGAAGTCGCTAATGAGGTTAAGGAAGAAGGTAAGGTGATGCAGAAAGCAAAAACGACTAGGATAAGTGGTTCTTTTCCCGAGGGCTCTGCAAAGAAGATGAGTAGTAAGTCCTCTTGGGAACAATCCATTGAAAGGTTAGATAAAAGTCATAAAACAGAAGTTCCTGAATCTAAGCTGAGATCAGCAGCAGCAAAATTTTCTATGAAAGGTGGTGTTTCAGCTACTGCTAGTAAGGAAAGGAAGGGTGGATTGGTTGAGAAGGTGGGACAGCTCAGAAGTGATTATGGTAAAAGGTATGTGAAGTTTGATGATAATGATGAAGAAGGAGTTGATGATGAAATGGAGGAGGAGATGGATGATCCAAGGTGGTATAACATAAAGAATAAGTTCAAGGGGATGGTGGGGGCAAAAGTTGGAATGGAGAGACCTGAGGTTCGAAGATGGAATAAGCAGGATAACTGGGGTAGAAAGACATTGAAAGAGGCCAGTGAATCCACTGTGCCTAAGATTGTTGGTGAGGGAATCTATGGGGTTGGTCCAGTTTTGGCTGCATTGTCAGCTGATCGAAGGGAATTCTATGCATTGTATGTTCAAGAAGGATTGGATTTGAGTGGCAACAATAGGAAGAAGAAGGACAAGAAAGGGTTTGAGAGAGTTCTGAAGATTGCTGAAAAGCTTGGTTTGAGTGTAAAAGAAGCATCAAAACATGATCTGAATATGGTGGCTGATAACCGTCCCCATCAGGGTTTGGTTTTAGACGCTTCACAGCTAGAGATGGTGAAAGTAAATGAACTGGATCCTGTTTCTATTGATGAAGGGAAGGGTTCCCTTTGGGTAGCCTTGGATGAGGTTACTGATCCTCAGAATTTGGGGGCAATAATTAGGTCTGCATATTTTTTTGGAGCTTCTGGGGTGGTGTTATGTGCCAAGAATTCAGCCCCATTGAGTGGTGTTGTGAGCAAAGCAAGTGCGGGATCACTTGAATTAATGGAACTTAGATATTGCAAGAATATGATGCAATTCTTAGTGTCTTCAGCTGAAAATGGTTGGCGAGTTCTTGGGGGCTCTGTCTCCTCCAAAGCTATTGCTTTGGATGAGGTTGTGCCTGGTCCACCGACCATTCTTGTTTTAGGTAGCGAGGGCACTGGTTTAAGACCATTGGTGGAGAGATCATGTACTCAGTTAGTTAGGATTCCTGGGAACATTCATTTTGACTCAAGTACTAGTGAATTGGATGGTGAAAGTAGTGGTTTAAATTCCCAGAGCTCTGGTAAAGAGTTCCTCTCATTTTTGGCCGTGGAAAGCTTAAATGTTAGTGTTGCAGCAGGTGTGCTTATTCACCACTTAATTGGGAAAAAGTTGGTAGATTCATTTCCAGAGGAGCATAAACAGATTGACATGTCTGAGTGA
>Glyma08g03750.1 sequence type=predicted peptide gene model=Glyma08g03750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYTNISKAQAFPLAAKISSQPKCFTSPLALKFPSLPLASHRNPMLKTPTSHKFGTLEMGKLANPHGLMLQIARRYCSARSTEKQLPWLEVANEVKEEGKVMQKAKTTRISGSFPEGSAKKMSSKSSWEQSIERLDKSHKTEVPESKLRSAAAKFSMKGGVSATASKERKGGLVEKVGQLRSDYGKRYVKFDDNDEEGVDDEMEEEMDDPRWYNIKNKFKGMVGAKVGMERPEVRRWNKQDNWGRKTLKEASESTVPKIVGEGIYGVGPVLAALSADRREFYALYVQEGLDLSGNNRKKKDKKGFERVLKIAEKLGLSVKEASKHDLNMVADNRPHQGLVLDASQLEMVKVNELDPVSIDEGKGSLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELMELRYCKNMMQFLVSSAENGWRVLGGSVSSKAIALDEVVPGPPTILVLGSEGTGLRPLVERSCTQLVRIPGNIHFDSSTSELDGESSGLNSQSSGKEFLSFLAVESLNVSVAAGVLIHHLIGKKLVDSFPEEHKQIDMSE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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