Report for Sequence Feature Glyma08g03720
Feature Type: gene_model
Chromosome: Gm08
Start: 2646166
stop: 2648026
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g03720
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G29140 AT
Annotation by Michelle Graham. TAIR10: MATE efflux family protein | chr4:14369148-14370746 FORWARD LENGTH=532
SoyBase E_val: 0 ISS
GO:0006855 GO-bp
Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport
SoyBase N/A ISS
GO:0031348 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response
SoyBase N/A ISS
GO:0046685 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
GO:0015238 GO-mf
Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity
SoyBase N/A ISS
GO:0015297 GO-mf
Annotation by Michelle Graham. GO Molecular Function: antiporter activity
SoyBase N/A ISS
KOG1347
KOG
Uncharacterized membrane protein, predicted efflux pump
JGI ISS
PTHR11206 Panther
MULTIDRUG RESISTANCE PUMP
JGI ISS
PTHR11206:SF38 Panther
NA+ DRIVEN MULTIDRUG EFFLUX PUMP
JGI ISS
PF01554 PFAM
MatE
JGI ISS
UniRef100_B9RKH9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Multidrug resistance pump, putative n=1 Tax=Ricinus communis RepID=B9RKH9_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1KPW5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KPW5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g03720
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g03720
Paralog Evidence Comments
Glyma05g35900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g03720 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g033200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g03720
Coding sequences of Glyma08g03720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g03720.2 sequence type=CDS gene model=Glyma08g03720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGATCAAAAACAGAGGAAGTAGTAGATTACACGTTGATGGAGGGAGCAGTAGAAAAAGAGGGGCAGCACTGTTGGAGCATAAGGAGAGAAGTGAAAGCGGTGGGGGAGCTGGCGTTTCCGATAGCCTTAACGGCGCTGATATTCTACGCGCGTTCCATGGTATCGATGCTGTTCCTGGGACACCTAGGAGAGCTAGAACTGGCAGCAGGGTCCCTAGGAATGGCGTTCGCGAACATCACAGGCTATTCGGTGCTGTCGGGTCTAGCACTCGGGATGGAACCGCTATGCTCCCAAGCATTCGGCGCAAAACGCGTGAATGTGTTGTCGTTGACCCTCCACCGCTGCGTCATGTTCCTGTTACTCTGCTCCATCCCAATATCACTCCTCTGGCTCAACATGTCCAACATCCTCGTTGATCTCTTGCACCAGGACCCCAACATCACCCTAATGGCCCACACCTACCTCCTCTTCTCCCTCCCCGACCTCCTCACCCACTCCTTCCTCCACCCAATCCGCATTTACCTTCGCGCCCAGGGCGTCACCCACCCTGTCACCTTAGCTTCCCTCGCCGGAACCCTCCTCCACCTCCCCTTCAACTACCTCCTCGTCACGCGCCTCCGCCTCGGCCTCGCCGGTGTCGCCGCTGCCTCCGCCGCTTCCAACCTCTCCATCCTCCTCTTCCTCGGTGCCGCCGTCTTCTTTTCCGGCTTGCACTGCTCCGCGCCGAGCCGAGAATGTCTCAGCGGCTGGAAGCCGCTCCTTCGGCTCGCTGCGCCTAGCTGCGTCTCCGTTTGCTTGGAGTGGTGGTGGTATGAGATCATGATCATTCTTTGCGGGCTTCTCGTGGACCCCACCGCTACCGTTGCTTCCATGGGGATACTCATTCAAATCACTTCACTCATCTATGTTTTTCCCTCCTCGCTTGGTTTCGCGGTTTCGACTCGCGTCGGGAACGCGCTGGGAGCCAATCGTCCCTCTCGGGCCAAACTATCCGCGGTGGTTTCTGTTTTTCTCGCAGCGATTATGGGATTCTCGGCGATGTTTTTCGCCGTCGGGATGCGGCGGCGGTGGGGGACGATGTTCACCGCCGACGAGGACATATTAAGGATCACGTCGATGGCGCTGCCGATCCTCGGAATTTGCGAACTCGGGAACTGTCCGCAGACGGTGGGGTGCGGCGTCGTTAGAGGGACGGCGCGGCCGAACACGGCGGCGAATGTGAACCTGGGCGCGTTCTATTTGGTCGGGATGCCCGTGGCAGTTGGACTTGGGTTCTGGTTTGACGTTGGATTCTGTGGGCTATGGCTGGGCCTGCTCTCGGCCCAGGTGTGTTGCGCGGGTCTTATGTTGTATGTGATTGGGACCACCGATTGGGAGTTTGAAGCCCATCGGGCCCAGTTGCTGACGTTGGTCGAAGATGGAGTGATGGACGGACAGAAACAGCCGTTGACGGGTGTTGTTACTGAGACTCCCTCGTCTTGA
Predicted protein sequences of Glyma08g03720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g03720.2 sequence type=predicted peptide gene model=Glyma08g03720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGSKTEEVVDYTLMEGAVEKEGQHCWSIRREVKAVGELAFPIALTALIFYARSMVSMLFLGHLGELELAAGSLGMAFANITGYSVLSGLALGMEPLCSQAFGAKRVNVLSLTLHRCVMFLLLCSIPISLLWLNMSNILVDLLHQDPNITLMAHTYLLFSLPDLLTHSFLHPIRIYLRAQGVTHPVTLASLAGTLLHLPFNYLLVTRLRLGLAGVAAASAASNLSILLFLGAAVFFSGLHCSAPSRECLSGWKPLLRLAAPSCVSVCLEWWWYEIMIILCGLLVDPTATVASMGILIQITSLIYVFPSSLGFAVSTRVGNALGANRPSRAKLSAVVSVFLAAIMGFSAMFFAVGMRRRWGTMFTADEDILRITSMALPILGICELGNCPQTVGCGVVRGTARPNTAANVNLGAFYLVGMPVAVGLGFWFDVGFCGLWLGLLSAQVCCAGLMLYVIGTTDWEFEAHRAQLLTLVEDGVMDGQKQPLTGVVTETPSS*