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Report for Sequence Feature Glyma08g03490

Feature Type:gene_model
Chromosome:Gm08
Start:2452791
stop:2455228
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g03490
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G26240AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13287011-13288896 REVERSE LENGTH=198 SoyBaseE_val: 2.00E-78ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1KPU1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KPU1_SOYBN SoyBaseE_val: 9.00E-139ISS

Expression Patterns of Glyma08g03490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g03490 not represented in the dataset
Glyma08g03490 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g03490 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g031000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g03490
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g03490
>Glyma08g03490.1   sequence type=CDS   gene model=Glyma08g03490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGCTGTCAAGGAAGTTGCGCAATGAAGAAGACAAAAACTTGTCTCTTCCGGTTCACGATGGAGACTCTCGTCCCTTGGACCCTCAAGAGCAAGAAGAGCTGGTTCGTTCTCTAGAAAGGAGTCAAGCTCAGCAGAGTCGCTTATGGAGGAGGGTATTTGCTGCTCTATTCTTCTGTTACATCGTGTTCCTTATGTACTCCATCGTCAATCAGGCTTCCTCTCCGTGGGAACTGCGGTATCACGCTTACTTCATGGAGGAGATCTACTCATGGATGATTATATCTGCAGACTGGGTGGCTGTTTTAGCATGCTCATTTGCCATCATAGGATTGCTTCATGAGTCGGTGCATCGCAGGAGATGGATCCATTACTCCTGGTACACTGGCGTTATTCTGGCAATCTTCTGGCTATATTACATGTTGAGGTTGCCGAAGTTCCGTTGGGATGTTATATGGCTACCATTTGGTCCTCTTGGTGCATCTGCAATCTGCCTCTATGTGGATCATTTACTAACTGAGTCATCAGAAGAGGTAAGAAAGCTTCGTGGATACATGTATACCTCCAAAGCAAGCTAG
Predicted protein sequences of Glyma08g03490
>Glyma08g03490.1   sequence type=predicted peptide   gene model=Glyma08g03490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKLSRKLRNEEDKNLSLPVHDGDSRPLDPQEQEELVRSLERSQAQQSRLWRRVFAALFFCYIVFLMYSIVNQASSPWELRYHAYFMEEIYSWMIISADWVAVLACSFAIIGLLHESVHRRRWIHYSWYTGVILAIFWLYYMLRLPKFRWDVIWLPFGPLGASAICLYVDHLLTESSEEVRKLRGYMYTSKAS*






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