Glyma08g03330 - SoyBase

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Report for Sequence Feature Glyma08g03330

Feature Type:	gene_model
Chromosome:	Gm08
Start:	2346418
stop:	2348262
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g03330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56840	AT	Annotation by Michelle Graham. TAIR10: myb-like transcription factor family protein \| chr5:22980789-22982152 FORWARD LENGTH=233	SoyBase	E_val: 4.00E-59	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR12374	Panther	TRANSCRIPTIONAL ADAPTOR 2 (ADA2)-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_Q0PJI8	UniRef	Annotation by Michelle Graham. Best UniRef hit: MYB transcription factor MYB127 n=1 Tax=Glycine max RepID=Q0PJI8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0PJI8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB127 n=1 Tax=Glycine max RepID=Q0PJI8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g03330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g03330

Paralog	Evidence	Comments
Glyma05g36290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g03330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g029400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g03330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g03330

Limit To All Plant Sequences

>Glyma08g03330.1   sequence type=CDS   gene model=Glyma08g03330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGAAGTGCTCACATTGTGGAACCATAGGCCATAACTCAAGGACCTGCACATCTTTGAGAGGGGCTACTACTAGTTTCGTTGGACTTCGCCTCTTCGGCGTGCAATTAGACAGTACTAATTGTGTTAGCATCAAGAAAAGCTTTAGCATGGACTCCTTACCCTCATCATCATCTTCCTCATTCTCTTCATCAAGACTAACCATTGATGAAAATTCTGACCGAACCTCTTTTGGGTATCTCTCAGATGGTCTCTTAGCTCGAGCCCAAGAGAGGAAGAAAGGAGTGCCATGGACAGAAGAGGAACACAGAATATTCCTTGTTGGACTTGAGAAGCTGGGAAAGGGTGACTGGAGGGGAATCTCTAGAAACTTTGTGACTACAAGAACCCCAACACAAGTGGCAAGCCATGCTCAAAAGTACTTTCTTCGATTGGCAACTATAGATAAGAAAAAGCGACGTTCAAGTCTCTTTGACTTGGTTGGTAGCAACAAAGCAGGTTCTAATTCAGTTTCGGCTCATCAAAAGGATGAGTCTAAATGTGAAGTTAAGAATAATGATGCTGCCACTTTGTCGTTGCTAGGGCGTATAACTTACTTTCAACAAGAAAACAAATCATCAGAGTATAAGCAAGAAACATTTGATAATTGCTCATATCAAAGTCAACCAGGTGAAGAGCATCAAGTCGCAGTTCTTAATCTGGATCTCACTCTTGCAGCCCCCAAGGCAAAGACCCTGCAGGAACAAAATAAGTCATCTCCTTCTGCTCCATTTCTGCTTGGGCCAATTAGCGTGACTTAA

Predicted protein sequences of Glyma08g03330

Limit To All Plant Sequences

>Glyma08g03330.1   sequence type=predicted peptide   gene model=Glyma08g03330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRKCSHCGTIGHNSRTCTSLRGATTSFVGLRLFGVQLDSTNCVSIKKSFSMDSLPSSSSSSFSSSRLTIDENSDRTSFGYLSDGLLARAQERKKGVPWTEEEHRIFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRLATIDKKKRRSSLFDLVGSNKAGSNSVSAHQKDESKCEVKNNDAATLSLLGRITYFQQENKSSEYKQETFDNCSYQSQPGEEHQVAVLNLDLTLAAPKAKTLQEQNKSSPSAPFLLGPISVT*

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