SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G19580 | AT | Annotation by Michelle Graham. TAIR10: tetraspanin2 | chr2:8472393-8475021 REVERSE LENGTH=270 | SoyBase | E_val: 1.00E-135 | ISS |
| GO:0007568 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aging | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR19282 | Panther | TETRASPANIN | JGI | ISS | |
| PTHR19282:SF137 | Panther | JGI | ISS | ||
| PF00335 | PFAM | Tetraspanin family | JGI | ISS | |
| UniRef100_B4F9T2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Senescence-associated protein 5 n=1 Tax=Zea mays RepID=B4F9T2_MAIZE | SoyBase | E_val: 4.00E-91 | ISS |
| UniRef100_I1KPS2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KPS2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g03290 not represented in the dataset |
Glyma08g03290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g029100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g03290.1 sequence type=CDS gene model=Glyma08g03290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGGTAAGCAACAACATCACCGCAGTGCTGAACTTGATAGCTACGCTGGCCTCAATTCCGATCATAGCCTCCGGCATTTGGCTGGCATCGAAGCCCGACAACGAGTGCGTGGCCAACTTCCGGTGGCCCATTGTCATCATCGGCATCCTCATCCTCCTCGTTTCCCTGGCCGGTTTTGTCGGTGCCTACTGGAACAAACAGGGTCTCCTCGCCCTCTACCTCTTCTGTATGGCTCTCCTCATCGCCCTCCTCCTCCTCGTTCTCGTCTTCGCATTCGTCGTCACCAGACCCGATGGAGCCTACGATGTCCCCGGAAGAGGCTACAAGGAGTACAGGCTTCACGGCTTCTCCTCCTGGTTGAGGAACCACGTCACCGGTTCCGGGAGTTGGCAGAAGATAAGGCCCTGTTTGGCTGCTTCTGATGTCTGCTCTAAGCTCACCCAGGATTACATCACTGCTGATCAATTCTTCAATTCCCATATCTCCCCCTTACAGTCAGGATGTTGCAAGCCTCCCACTGCTTGTGGGTACAATTATGTAAACCCCATACTATGGACAAACCCTGTGAACCCTATGGCTGATTCAGATTGCTACTTGTGGAACAATGACCAGAATCAGCTATGCTACAATTGTAATGCGTGCAAGGCTGGTCTATTGGGTAACCTCAGAAAAGAATGGAGGAAAGCAAATATCATTCTCATTGTGGCAGTGGTGGTCCTCATATGGGTCTATGTCATAGCTTGTAGTGCCTTCAGGAATGCCCAAACAGAAAACCTCTTCGACCGTTACAAACAGGGTTGGGTTTGA
>Glyma08g03290.1 sequence type=predicted peptide gene model=Glyma08g03290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGVSNNITAVLNLIATLASIPIIASGIWLASKPDNECVANFRWPIVIIGILILLVSLAGFVGAYWNKQGLLALYLFCMALLIALLLLVLVFAFVVTRPDGAYDVPGRGYKEYRLHGFSSWLRNHVTGSGSWQKIRPCLAASDVCSKLTQDYITADQFFNSHISPLQSGCCKPPTACGYNYVNPILWTNPVNPMADSDCYLWNNDQNQLCYNCNACKAGLLGNLRKEWRKANIILIVAVVVLIWVYVIACSAFRNAQTENLFDRYKQGWV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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