SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G19570 | AT | Annotation by Michelle Graham. TAIR10: cytidine deaminase 1 | chr2:8470598-8471503 REVERSE LENGTH=301 | SoyBase | E_val: 3.00E-98 | ISS |
| GO:0009972 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytidine deamination | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004126 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cytidine deaminase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG0833 | KOG | Cytidine deaminase | JGI | ISS | |
| PTHR11644 | Panther | CYTIDINE DEAMINASE | JGI | ISS | |
| PTHR11644:SF5 | Panther | CYTIDINE DEAMINASE 1, 2, 7, 8 | JGI | ISS | |
| PF00383 | PFAM | Cytidine and deoxycytidylate deaminase zinc-binding region | JGI | ISS | |
| PF08211 | PFAM | Cytidine and deoxycytidylate deaminase zinc-binding region | JGI | ISS | |
| UniRef100_I1KPS1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytidine deaminase n=1 Tax=Glycine max RepID=I1KPS1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KPS1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Cytidine deaminase n=1 Tax=Glycine max RepID=I1KPS1_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma08g03280 not represented in the dataset |
Glyma08g03280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g36320 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g029000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g03280.1 sequence type=CDS gene model=Glyma08g03280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCAACCCAGCCGTAAGTTCTTAATCTCAGCCTCGGAAGCCTTGGCCATGGCGGAGTCCGCCGCCGTGACCCTCCCGGAACTCCTTCCCACCCTGGTCCCCACCGCCCAGCCCCTGGCCCCCTCCGGCCGCATCTTGGTGGGCGTGAACCTGGAGTTCCCTGGGCTCCCCCTCCACCACTCCGTCCACGCCGAACAGTTCCTGATCACCAACCTCTCCCTGAATGCAGAGCCCCACCTGGTTTCCCTTGCCGTCTCCGCCGCCCCCTGCGGGCACTGCCGGCAGTTCCTCCAAGAACTCCGCGCCGCCGCCGACGTCCAAATCCTGGTAACCTCGGAGGCCACAGCAGAGTTCGGGCCACTCTCTGACTTGCTCCCTCAGAGGTTCTGTCCCCACGACCTTCTCCCCCTTGAAGCTCCCCTTCTCTTGGAACCCCACCACAACACCCTCACCCTCACCCTCCACCACCAACACCTTCCCAATTATAAGTTGAAGACTGCGGCTCTGGAGGCCGCCAACAAATCTCATGCACCCTACAGTGGCTCCCCCTCTGGTGTGGCTCTTCTCGACTGCCATGGCAATGTTTTTAAAGGTTCCTACATGGAATCCGCCGCCTTTAATCCCAGCTTGGGCCCCGTTCAGGCAGCCCTCGTCGCATTCGTCTCCGGCGGCGGCGGCGACTACGACCAGATTGTGGGTGCGGTCTTGGTGGAGAAGGAGGATGCCGTCGTTAAACAGGAGAGCACGGCGAGGTTGTTGATTAACTCCATTTCGCCCAATTGCCAATTCGACACATTCCTTTGCCACTGCAACCCTAATCACATTGTTTAA
>Glyma08g03280.1 sequence type=predicted peptide gene model=Glyma08g03280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDQPSRKFLISASEALAMAESAAVTLPELLPTLVPTAQPLAPSGRILVGVNLEFPGLPLHHSVHAEQFLITNLSLNAEPHLVSLAVSAAPCGHCRQFLQELRAAADVQILVTSEATAEFGPLSDLLPQRFCPHDLLPLEAPLLLEPHHNTLTLTLHHQHLPNYKLKTAALEAANKSHAPYSGSPSGVALLDCHGNVFKGSYMESAAFNPSLGPVQAALVAFVSGGGGDYDQIVGAVLVEKEDAVVKQESTARLLINSISPNCQFDTFLCHCNPNHIV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
