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Report for Sequence Feature Glyma08g03130

Feature Type:gene_model
Chromosome:Gm08
Start:2206885
stop:2216097
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g03130
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G06990AT Annotation by Michelle Graham. TAIR10: RNA helicase, ATP-dependent, SK12/DOB1 protein | chr2:2895135-2900909 FORWARD LENGTH=995 SoyBaseE_val: 0ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0000398GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome SoyBaseN/AISS
GO:0003002GO-bp Annotation by Michelle Graham. GO Biological Process: regionalization SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0007155GO-bp Annotation by Michelle Graham. GO Biological Process: cell adhesion SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009933GO-bp Annotation by Michelle Graham. GO Biological Process: meristem structural organization SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0010093GO-bp Annotation by Michelle Graham. GO Biological Process: specification of floral organ identity SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0016070GO-bp Annotation by Michelle Graham. GO Biological Process: RNA metabolic process SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0016571GO-bp Annotation by Michelle Graham. GO Biological Process: histone methylation SoyBaseN/AISS
GO:0016579GO-bp Annotation by Michelle Graham. GO Biological Process: protein deubiquitination SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0030422GO-bp Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference SoyBaseN/AISS
GO:0033043GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of organelle organization SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045010GO-bp Annotation by Michelle Graham. GO Biological Process: actin nucleation SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048449GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ formation SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003724GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA helicase activity SoyBaseN/AISS
GO:0004386GO-mf Annotation by Michelle Graham. GO Molecular Function: helicase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008026GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity SoyBaseN/AISS
GO:0016817GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides SoyBaseN/AISS
GO:0016818GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides SoyBaseN/AISS
KOG0948 KOG Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily JGI ISS
PTHR11752Panther HELICASE SKI2W JGI ISS
PTHR11752:SF2Panther HELICASE SKI2-RELATED JGI ISS
PF00270PFAM DEAD/DEAH box helicase JGI ISS
PF00271PFAM Helicase conserved C-terminal domain JGI ISS
PF08148PFAM DSHCT (NUC185) domain JGI ISS
UniRef100_G7LIV7UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent RNA helicase DOB1 n=1 Tax=Medicago truncatula RepID=G7LIV7_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KPQ5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KPQ5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g03130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g03130 not represented in the dataset
Glyma08g03130 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g03130
ParalogEvidenceComments
Glyma05g36441 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g03130 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g027700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g03130
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g03130
>Glyma08g03130.1   sequence type=CDS   gene model=Glyma08g03130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATAGAGTCGCCAACACTGGGAAAGCGAAGAGAACCCGAGCTCCCAGTAACAGAGACCACTTCAATGCCGAAGAAAGCTCGCAGTTCGGAACGCACGTGCGTGCACGAGGTGGCCGTTCCGAGCAGCTACGTCTCGAGCAAGGACGAAGAGCTCCACGGAACCCTCTCGAACCCTCTCCACAACGGTCCCATGGCTAAGTCCTATCCCTTCACCCTCGACCCCTTCCAGCAGGTCTCCATCGCCTGCCTGGAGCGCAACGAGTCCGTCCTCGTCTCCGCCCACACCTCCGCCGGCAAGACCGCCGTCGCCGAGTACGCCATCGCCATGTCCTTCCGCGACAAGCAGCGCGTCATCTACACCTCCCCTCTCAAGGCCCTCAGCAACCAGAAGTACCGCGAACTCAGCCAGGAGTTCACCGACGTCGGCCTCATGACCGGCGACGTCACGCTCTCTCCGAACGCCACGTGTCTCGTCATGACCACCGAGATTCTCCGTGGAATGCTCTACAGAGGATCCGAGGTTTTAAAAGAAGTGGCCTGGGTTATATTTGATGAGATTCATTACATGAAGGATCGCGAACGAGGCGTTGTTTGGGAAGAGAGTATAATCTTTCTGCCACCGGCGATTAAGATGGTTTTCCTTTCGGCTACTATGTCCAACGCCACCGAGTTTGCTGAGTGGATTTGTAATATTCACAAGCAGCCTTGTCATGTTGTGTACACTGATTTTAGGCCCACGCCTTTGCAGCACTATGTGTTCCCCATGGGGGGGAGTGGGTTGTATTTGGTTGTGGATGAGAATGAACAGTTCAGGGAGGATAATTTTTTGAAGCTGCAGGATACTTTCACGAAGCAGAATTTAGGGGATGGGAAGAGGGGTGGGAAAGGCGCTGGAAGAGGTGGTAAAGGTGGCAATGCCTCTGGTGGTTCTGATATTTACAAGATTGTTAAGATGATCATGGAACGGAAATTCCAACCTGTTATCATCTTTAGCTTCAGTAGAAGAGAGTGTGAACAACATGCAATGTCTATGTCCAAGCTTGACTTCAACTCTCAAGAAGAAAAGGATACAGTGGAGCATGTTTTTCAAAATGCAGTGCTCTGTTTGAATGAAGAAGACAGGAACTTACCTGCTATTGAGCTGATGTTGCCACTTCTTCAGCGAGGAATTGCTGTCCATCATTCTGGACTTCTTCCTGTCATCAAAGAATTGGTCGAGCTTCTTTTCCAGGAAGGTCTTGTAAAAGCCCTCTTCGCTACTGAAACATTTGCAATGGGTTTAAATATGCCGGCGAAAACTGTCATATTCACTGCTGTTAAGAAATGGGATGGTGATAGTCACCGTTATATTGGATCTGGTGAATATATACAGATGAGTGGAAGGGCTGGGCGTCGTGGCAAAGATGAACGTGGAATTTGTATCATAATGATAGATGAACAGATGGAAATGAATAACCTTAAAGACATGGTTTTGGGTAAACCTGCTCCTTTAGTTAGTACATTCAGGCTTAGCTACTACTCAATTTTAAATTTGATGAGCCGTGCAGAAGGCCAGTTCACAGCCGAACACGTAATAAGAAATTCATTTCATCAATTTCAATATGAAAAGGCCTTACCAGATATGGAGAAAAGGGTGTCAAAGCTAGAGCAGGAAGTAGCCTTGCTTGATGCTTCAGGGGAGGCTCAAGTATCTGAATATCATAAGCTAAAACTGGAAATAGCACAGCTGGAGAAGAAGATTATGTCAAAAATAATAAGGCCTGAAATAATTCTTTATTTTCTTGTCCCTGGTCGATTGATCAAAGTAAGAGAAGGTGGAACTGATTGGGGCTGGGGTGTTGTTGTCAATGTTGTTAAGAAACCTTCTGGTGGTGGTTATATAGTTGATACTTTACTTCATTGTTCACCTGTTTCAAATGAAAACAGTTCTCGGCCAAAACCATGCCCGCCTCGCCCTGGAGAGAAAGGTGAAATGCATGTGGTTCCTGTTCAATTACCATTAATCTCTGCCCTTGGTCAACTGAGGGTATCCATACCTCCCGATCTTCGACCCTTGGAAGCAAGGCAAAGTATATTGCTTGCTGTACAGGAGCTGGGCAACCGTTTTCCCCAAGGTCTTCCAAAGCTTAACCCTGTAAAGGACATGGACGTACGGGACTCAGAAATAGTTGAACTAGTGAATCAAGTTGAGGAACTTGAGAAAAAATTGTTCACTCATCCTATGCATAAGCATCAAGATATGGATCAAATTAAATGCTTTGAGAGGAAAGCAGAAGTGAATCATGAAGTTCAGCAACTGAAGACAAAAATGCGGGATTCCCAGCTACAAAAATTTCGTGAAGAACTTAAGAATCGCTCACGAGTCTTAAAGAAACTTGGTCATATTGATGCTGATGGTGTAGTTCAGTTGAAGGGACGAGCAGCCTGCTTGATTGACACAGGCGATGAACTCCTTGTCACTGAATTAATGTTTAATGGTACTTTTAATGACCTTGACCATCATCAAGTTGCTGCCCTTGCAAGTTGTTTCATACCAGGAGATAAGTCAACTGAGCAGATACAATTGAGAACAGAGCTTGCTAGGCCTCTGCAACAGCTTCAAGATAGTGCAAGAAGGATAGCTGAGATACAACATGAATGCAAATTGGATATAAATGTGAATGAGTATGTGGATTCAACCGTAAGACCATTCTTGATGGATGTGATATACTCATGGTCAAAGGGAGCAAATTTTGCCGATGTTATACAAATGACTGACATCTTTGAAGGGAGTATTATTCGGAGTGCTAGAAGACTTGATGAGTTTTTGAATCAGTTGCGTGCTGCTGCTAATGCAGTTGGAGAGGCTGACTTGGAGAAGAAGTTTGCAGCTGCAAGTGAAAGCCTTCGACGAGGTATTATGTTTGCTAATTCTCTGTATCTGTGA
Predicted protein sequences of Glyma08g03130
>Glyma08g03130.1   sequence type=predicted peptide   gene model=Glyma08g03130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIESPTLGKRREPELPVTETTSMPKKARSSERTCVHEVAVPSSYVSSKDEELHGTLSNPLHNGPMAKSYPFTLDPFQQVSIACLERNESVLVSAHTSAGKTAVAEYAIAMSFRDKQRVIYTSPLKALSNQKYRELSQEFTDVGLMTGDVTLSPNATCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIHKQPCHVVYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFREDNFLKLQDTFTKQNLGDGKRGGKGAGRGGKGGNASGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNSQEEKDTVEHVFQNAVLCLNEEDRNLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVIFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMNNLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQFQYEKALPDMEKRVSKLEQEVALLDASGEAQVSEYHKLKLEIAQLEKKIMSKIIRPEIILYFLVPGRLIKVREGGTDWGWGVVVNVVKKPSGGGYIVDTLLHCSPVSNENSSRPKPCPPRPGEKGEMHVVPVQLPLISALGQLRVSIPPDLRPLEARQSILLAVQELGNRFPQGLPKLNPVKDMDVRDSEIVELVNQVEELEKKLFTHPMHKHQDMDQIKCFERKAEVNHEVQQLKTKMRDSQLQKFREELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPGDKSTEQIQLRTELARPLQQLQDSARRIAEIQHECKLDINVNEYVDSTVRPFLMDVIYSWSKGANFADVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEADLEKKFAAASESLRRGIMFANSLYL*






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