SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G35360 | AT | Annotation by Michelle Graham. TAIR10: acetyl Co-enzyme a carboxylase biotin carboxylase subunit | chr5:13584300-13588268 FORWARD LENGTH=537 | SoyBase | E_val: 0 | ISS |
| GO:0000271 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process | SoyBase | N/A | ISS |
| GO:0006084 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process | SoyBase | N/A | ISS |
| GO:0006633 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009805 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process | SoyBase | N/A | ISS |
| GO:0009825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009932 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell tip growth | SoyBase | N/A | ISS |
| GO:0010817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0016132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0003989 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acetyl-CoA carboxylase activity | SoyBase | N/A | ISS |
| GO:0004075 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: biotin carboxylase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016874 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ligase activity | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG0238 | KOG | 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit | JGI | ISS | |
| PTHR18866 | Panther | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA | JGI | ISS | |
| PTHR18866:SF55 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00289 | PFAM | Carbamoyl-phosphate synthase L chain, N-terminal domain | JGI | ISS | |
| PF02785 | PFAM | Biotin carboxylase C-terminal domain | JGI | ISS | |
| PF02786 | PFAM | Carbamoyl-phosphate synthase L chain, ATP binding domain | JGI | ISS | |
| UniRef100_O81273 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Biotin carboxylase n=1 Tax=Glycine max RepID=O81273_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O81273 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Biotin carboxylase n=1 Tax=Glycine max RepID=O81273_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g03120 not represented in the dataset |
Glyma08g03120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g36450 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g027600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g03120.1 sequence type=CDS gene model=Glyma08g03120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGTCACACTTTCAGCCTGCAAGTCCGTTAGCTCGCCTTCTGTTCCCGTCGCAGGTTTGTTTGCGGGGAATGGAGGAATTAAGAGCTCGCAATGCAGTTTCTTAGCGGGAGCGAGCAAAGTGAGGTTTCCTAGGCAAGTAGGTCAAGTTAGCCACCTTCGCAAACAGCGCCAAACGCGTCACTGCGGTGCTCTCCACGCGACTTGCAGCGGTGACAAGATCCTGATCGCGAACAGAGGCGAGATTGCCGTCCGCGTTATTCGAACCGCTCATGAATTGGGGATTCCTTGTGTGGCTGTGTACTCCACCATCGACAAGGACGCGCTTCATGTCAAATTGGCTGATGAAGCCGTTTGCATCGGGGAAGCGCCGAGTAGCCAGTCCTACTTGCTGATCCCGAATGTTCTGTCAGCTGCTATTAGCCGCAGATGCACCATGTTGCATCCTGGCTATGGTTTTCTTGCGGAGAATGCAGTGTTTGTTGAAATGTGCAGAGAACATGGAATCAACTTTATTGGGCCTAACCCTGACAGTATTCGGGTTATGGGTGACAAAGCAACTGCCAGAGAGACAATGAAGAAAGCAGGTGTTCCCACCGTTCCGGGAAGTGATGGCCTTTTACAGAGCACAGAAGAAGCTATCAGACTGGCAAATGAGATTGGTTTCCCTGTGATGATCAAGGCAACAGCTGGTGGTGGAGGACGTGGCATGCGTCTTGCTAAAGAACCTGCTGAGTTTGTGAAGTTTTTACAGCAAGCTAAGAGTGAGGCAGCTGCTGCATTTGGCAATGATGGGGTTTATTTGGAGAAGTACATTCAAAACCCAAGGCACATTGAGTTCCAGGTTCTTGCAGATAAATATGGTAATGTTGTTCACTTTGGAGAACGTGATTGCAGCATTCAGAGGCGCAACCAGAAACTGCTTGAAGAAGCACCATCTCCTGCCCTGACCCCTGAGTTGCGAAAGGCAATGGGAGATGCAGCAGTTGCAGCTGCTGCATCTATTGGTTACATAGGTGTTGGAACGGTTGAGTTCCTTTTGGATGAAAGAGGTTCCTTTTACTTTATGGAGATGAACACTCGTATCCAGGTTGAGCATCCGGTGACAGAAATGATTTCCTCAACGGATTTGATAGAAGAGCAAATTCGTGTAGCTATGGGAGAAAAACTTCGATACAAACAGGAGGATATTGTCCTCAGAGGACATTCTATTGAATGCCGTATCAATGCAGAAGATGCTTTTAAGGGATTTAGACCAGGGCCAGGTAGAATTACTGCATACTTGCCATCCGGAGGTCCATTTGTTAGAATGGATAGCCATGTTTATCCTGATTATGTGGTTCCTCCAAGCTATGATTCCCTTCTTGGAAAGCTGATTGTATGGGCTCCAACTAGAGAAAAAGCAATTGAACGCATGAAAAGGGCACTTGATGATACTATTATCACAGGAGTTCCTACTACAATTGATTATCATAAACTTATCCTTGACATAGAGGATTTCAGAAATGGCAAGGTTGATACTGCTTTTATTCCAAAACACGAGGAAGAGTTGGCAATGCCACCGCAGAAGATGGTACTCGCTAACAGGGTGAATGAACTAGCTGGTTCAACTGCCTGA
>Glyma08g03120.1 sequence type=predicted peptide gene model=Glyma08g03120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEVTLSACKSVSSPSVPVAGLFAGNGGIKSSQCSFLAGASKVRFPRQVGQVSHLRKQRQTRHCGALHATCSGDKILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSSQSYLLIPNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKATARETMKKAGVPTVPGSDGLLQSTEEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPAEFVKFLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSTDLIEEQIRVAMGEKLRYKQEDIVLRGHSIECRINAEDAFKGFRPGPGRITAYLPSGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILDIEDFRNGKVDTAFIPKHEEELAMPPQKMVLANRVNELAGSTA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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