Glyma08g03035 - SoyBase

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Report for Sequence Feature Glyma08g03035

Feature Type:	gene_model
Chromosome:	Gm08
Start:	2125025
stop:	2126880
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g03035

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47040	AT	Annotation by Michelle Graham. TAIR10: lon protease 2 \| chr5:19093356-19098678 REVERSE LENGTH=888	SoyBase	E_val: 1.00E-12	ISS
GO:0006200	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP catabolic process	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0006515	GO-bp	Annotation by Michelle Graham. GO Biological Process: misfolded or incompletely synthesized protein catabolic process	SoyBase	N/A	ISS
GO:0016485	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein processing	SoyBase	N/A	ISS
GO:0016560	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix, docking	SoyBase	N/A	ISS
GO:0038032	GO-bp	Annotation by Michelle Graham. GO Biological Process: termination of G-protein coupled receptor signaling pathway	SoyBase	N/A	ISS
GO:0040007	GO-bp	Annotation by Michelle Graham. GO Biological Process: growth	SoyBase	N/A	ISS
GO:0048527	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root development	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005782	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisomal matrix	SoyBase	N/A	ISS
GO:0009295	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleoid	SoyBase	N/A	ISS
GO:0043233	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: organelle lumen	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004176	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent peptidase activity	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008236	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PTHR10046	Panther	ATP DEPENDENT LON PROTEASE FAMILY MEMBER	JGI		ISS
PTHR10046:SF24	Panther	PEROXISOMAL LON PROTEASE HOMOLOG 2	JGI		ISS
UniRef100_G7IUC7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Outer envelope protein of 80 kDa n=1 Tax=Medicago truncatula RepID=G7IUC7_MEDTR	SoyBase	E_val: 2.00E-13	ISS
UniRef100_I1MDA6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDA6_SOYBN	SoyBase	E_val: 3.00E-15	ISS

Expression Patterns of Glyma08g03035

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g03035 not represented in the dataset	Glyma08g03035 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g03035 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g026800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g03035

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g03035

Limit To All Plant Sequences

>Glyma08g03035.2   sequence type=transcript   gene model=Glyma08g03035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAGTTAAACTGTGCAATCAATAGTCAGAATATTTCTGCCATATGCATAAATTAAATGTTAATATGATATAGATTATATTATACTACTGATTTTTTTCCTTCAAAAATTCTATATCATTTCAGCTTACCGGAGTACGTGATGAGAAAGGTATTCCTATCATTAAGGATTGTTACAACAGTCCTCTTACTGCAAGGTTGTAGTCTAAGTAAAGCTAACAATATGGTTATCATGACTTTGTGTGGTTGTTTCTAACTTCTATCAAATTTTCCTTGTAATGGCAATATCCATGATGATACATTGCTTGCTAAACTTGAGACTGGTTACACTGGTTCTGGCGACCATGGATCTTCTATGTTTGTCCTTAACATGGAAAAGGGAGTTCCACTTTTGCCTAAATGGTTATCCTTCTCTAGGGTGAATGCACGTGCCTGGACGGGCGTTGAGATAGGTCCTGCTCGCCTTCATTTAAGCTTAAGCCAGAAGCTAGGGGTCCAGATTGTGCTTTGTTGGACCACCAGTTGTTGGAAAGACATCACTGGCATCCTCTATAGTTGCTGCACGGGGTGTAAAATTTGTGTGCATATCCCTAGTGGAGTCAAGGATGAGGCTGATATTAGAGGACATAGGAGAACATACATTGGAAGCATGCCTGGGAGGCTTATTGATGGACTGAAGGTTCAGAATCTAACTTAGACATTGAACGCTAACATTATCTGTTCTTACAAAATTTGCAAATGCTTGTAGGTTTTATGATACATGGACTGCCAGCATTTCTTGTTATGTTTCTTTCCATCTTTTATTCTCCTAGGGAAATAGACTAGAGATGACAAGTGAATATTAGTTCTCAAGGACACAAACTCTAGATTCAGAATGTTTATGCAGTAGATTAAAAAGGAGTGTTGATTGGGTTACAATGCAAATTGTAGATTCTAAATTTTTAATATGTATTACTTTGCAATTTACTAATTATGTGTGCTCACATGAAAGTGAAGTCATTTCATTACATTAATATATTTGCAATTGTAAGTATTTTAAAGAGCA

Coding sequences of Glyma08g03035

Limit To All Plant Sequences

>Glyma08g03035.1   sequence type=CDS   gene model=Glyma08g03035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAAGTTTGTCCTTAACATGGAAAAGGGAGTTCCACTTTTGCCTAAATGGTTATCCTTCTCTAGGGTGAATGCACGTGCCTGGACGGGCGTTGAGATAGGTCCTGCTCGCCTTCATTTAAGCTTAAGCCAGAAGCTAGGGGTCCAGATTGTGCTTTGTTGGACCACCAGTTGTTGGAAAGACATCACTGGCATCCTCTATAGTTGCTGCACGGGGTGTAAAATTTGTGTGCATATCCCTAGTGGAGTCAAGGATGAGGCTGATATTAGAGGACATAGGAGAACATACATTGGAAGCATGCCTGGGAGGCTTATTGATGGACTGAAGGTTCAGAATCTAACTTAG

>Glyma08g03035.2   sequence type=CDS   gene model=Glyma08g03035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGTCCTTAACATGGAAAAGGGAGTTCCACTTTTGCCTAAATGGTTATCCTTCTCTAGGGTGAATGCACGTGCCTGGACGGGCGTTGAGATAGGTCCTGCTCGCCTTCATTTAAGCTTAAGCCAGAAGCTAGGGGTCCAGATTGTGCTTTGTTGGACCACCAGTTGTTGGAAAGACATCACTGGCATCCTCTATAGTTGCTGCACGGGGTGTAAAATTTGTGTGCATATCCCTAGTGGAGTCAAGGATGAGGCTGATATTAGAGGACATAGGAGAACATACATTGGAAGCATGCCTGGGAGGCTTATTGATGGACTGAAGGTTCAGAATCTAACTTAG

Predicted protein sequences of Glyma08g03035

Limit To All Plant Sequences

>Glyma08g03035.1   sequence type=predicted peptide   gene model=Glyma08g03035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRKFVLNMEKGVPLLPKWLSFSRVNARAWTGVEIGPARLHLSLSQKLGVQIVLCWTTSCWKDITGILYSCCTGCKICVHIPSGVKDEADIRGHRRTYIGSMPGRLIDGLKVQNLT*

>Glyma08g03035.2   sequence type=predicted peptide   gene model=Glyma08g03035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFVLNMEKGVPLLPKWLSFSRVNARAWTGVEIGPARLHLSLSQKLGVQIVLCWTTSCWKDITGILYSCCTGCKICVHIPSGVKDEADIRGHRRTYIGSMPGRLIDGLKVQNLT*

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