Glyma08g03005 - SoyBase

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Report for Sequence Feature Glyma08g03005

Feature Type:	gene_model
Chromosome:	Gm08
Start:	2090222
stop:	2095947
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g03005

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31170	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr4:15153499-15154846 REVERSE LENGTH=412	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006914	GO-bp	Annotation by Michelle Graham. GO Biological Process: autophagy	SoyBase	N/A	ISS
GO:0010053	GO-bp	Annotation by Michelle Graham. GO Biological Process: root epidermal cell differentiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004712	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0192	KOG	Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs	JGI		ISS
PTHR23257	Panther	SERINE-THREONINE PROTEIN KINASE	JGI		ISS
PTHR23257:SF82	Panther	PROTEIN KINASE ATMRK1	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_I1KPP1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KPP1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9AWA6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine/tyrosine kinase n=1 Tax=Arachis hypogaea RepID=Q9AWA6_ARAHY	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g03005

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g03005 not represented in the dataset	Glyma08g03005 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g03005

Paralog	Evidence	Comments
Glyma05g36540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g03005 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g026500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g03005

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g03005

Limit To All Plant Sequences

>Glyma08g03005.2   sequence type=transcript   gene model=Glyma08g03005   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAATAAACTTTACAAACAAATAAATAGTATAGAAAAACCAAAAAGAAAGTCATCCGTTTCATTTTCTTCTGCGCTTCTTCTCTGGTCTCTGGCTTCCTTGGTACGGGAAGCACTCAATCTTGTCCATTTCCCTTTGGTTTTTCTCTCTTCGATCTCTTCACCTTCCATTCGACCACCCTCTTATCACAGCTCGCGTTAACTTAAGCCCTCTCCGTTGAGGGTTTCTCCAGGTGTGGTTTGATTTTCAGTTTCTGATGCTGAAGAAATAAAAAAGCTTGAAGGCTTTGCTCTTCTGTGTGAAAAATGTTGGAAGGTGGTGCGAAATTCCCGGGAATAATAGATCTCAACAAGAATAATAACAACTACTATGATTTCTCTCAAGGCTTTTACCATAAGCTGGGGGAGGGTACCAATATGTCAATTGACAGCGTTGGGAGCTTACAGACAAGTAACGGCGGAGGATCTGTTGCGATGTCTATCGATAATAGCAGTGTTGGGTCCAATGATTCCCATACTCGCATGTTGGACCACCAAGGGTTACGGAGGCGTGCCAATGATAACTACTCTGTTGCACATAGTGCCAATCGTCGGGGAAGAGTCACCCATGCTTTGAGTGATGATGCTTTAGCTCAAGCTCTAATGGACAATAGTTCTCCGACTGAAGGGCTTGACAATTTTGATGAGTGGACAATTGATTTGAGGAAACTGAATATGGGTGAGCCTTTTGCTCAAGGAGCTTTTGGGAAACTCTACAGAGGTACTTACAATGGTGAAGATGTTGCTATTAAAATCTTGGAGAGGCCTGAAAATGATCCAGCAAAGGCTCAATTGATGGAGCAACAGTTCCAGCAGGAGGTCATGATGTTGGCCACACTAAAGCATCCTAACATAGTTCGTTTCATTGGTGCGTGCCGCAAGCCAATGGTATGGTGCATTGTAACTGAGTATGCCAAAGGTGGTTCGGTTCGACAATTTTTAATGAAGCGTCAAAACCGCTCAGTTCCCCTCAAATTGGCTGTCAAACAAGCTTTGGATGTTGCAAGGGGGATGGCTTATGTTCATGGCCTTTTATTGATCCACAGGGACTTGAAATCTGATAATCTTTTGATTTTTGGTGACAAGTCAATTAAAATTGCTGACTTTGGAGTTGCTCGTATTGAGGTGCAAACTGAAGGAATGACACCTGAGACTGGAACATACCGTTGGATGGCTCCGGAGATGATCCAGCATAGGCCTTACACACAAAAAGTGGATGTATATAGCTTTGGGATTGTTCTATGGGAACTCATTACCGGTATGCTTCCATTTCAGAACATGACAGCAGTACAGGCTGCATTTGCAGTTGTCAACAAAAATGTTCGTCCAATCATACCCAACGATTGCCTACCTGTTCTCCGTGACATCATGACAAGATGCTGGGATCCCAACCCTGATGTTAGGCCACCATTTGCTGAAATTGTAGGAATGCTTGAGAATGCAGAGAATGAGATCATGACAACAGTTCGGAAGGCCCGGTTCAGGTGTTGCATGACTCAACCAATGACTGCTGACTGATCCTGTGAAAGCAAATGCAAATGCAAATGCAAAAAAGTCATAAAAACATAGACTGGAATATTTGGGGGCAAGATGAAACTCTGGTAGTGAAGGGGTGACTATATTATAGCTTTGTGTATCTGTGTGTTTTATTTATTTCTTCTGAAGAAAAAAATGAAAATCTTATCTGGAGACCTTTTGCTTATTCGGTTTCTGTTTACTGAATGTCTGTTCTGAATTAGTAAAAAGAAGATGCTGTATGTAATACATGCATGTTTTACAGTTATGTATAGCTTGAGTTCTGAAGTCAGATAAAATGAGATTATGGGCGAAAACTTTTGCTTTGTATGATGTATGCTTGCCGTTGCAGTTGCACCACAACTACCCCGGGGATTGACATACTGCCTGGTTTGGTTCAACTGGGGCTTAAATTTAGCAAGTAAAAGAAAATAAATCAGAGTTATCC

Coding sequences of Glyma08g03005

Limit To All Plant Sequences

>Glyma08g03005.1   sequence type=CDS   gene model=Glyma08g03005   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGAAGGTGGTGCGAAATTCCCGGGAATAATAGATCTCAACAAGAATAATAACAACTACTATGATTTCTCTCAAGGCTTTTACCATAAGCTGGGGGAGGGTACCAATATGTCAATTGACAGCGTTGGGAGCTTACAGACAAGTAACGGCGGAGGATCTGTTGCGATGTCTATCGATAATAGCAGTGTTGGGTCCAATGATTCCCATACTCGCATGTTGGACCACCAAGGGTTACGGAGGCGTGCCAATGATAACTACTCTGTTGCACATAGTGCCAATCGTCGGGGAAGAGTCACCCATGCTTTGAGTGATGATGCTTTAGCTCAAGCTCTAATGGACAATAGTTCTCCGACTGAAGGGCTTGACAATTTTGATGAGTGGACAATTGATTTGAGGAAACTGAATATGGGTGAGCCTTTTGCTCAAGGAGCTTTTGGGAAACTCTACAGAGGTACTTACAATGGTGAAGATGTTGCTATTAAAATCTTGGAGAGGCCTGAAAATGATCCAGCAAAGGCTCAATTGATGGAGCAACAGTTCCAGCAGGAGGTCATGATGTTGGCCACACTAAAGCATCCTAACATAGTTCGTTTCATTGGTGCGTGCCGCAAGCCAATGGTATGGTGCATTGTAACTGAGTATGCCAAAGGTGGTTCGGTTCGACAATTTTTAATGAAGCGTCAAAACCGCTCAGTTCCCCTCAAATTGGCTGTCAAACAAGCTTTGGATGTTGCAAGGGGGATGGCTTATGTTCATGGCCTTTTATTGATCCACAGGGACTTGAAATCTGATAATCTTTTGATTTTTGGTGACAAGTCAATTAAAATTGCTGACTTTGGAGTTGCTCGTATTGAGGTGCAAACTGAAGGAATGACACCTGAGACTGGAACATACCGTTGGATGGCTCCGGAGATGATCCAGCATAGGCCTTACACACAAAAAGTGGATGTATATAGCTTTGGGATTGTTCTATGGGAACTCATTACCGGTATGCTTCCATTTCAGAACATGACAGCAGTACAGGCTGCATTTGCAGTTGTCAACAAAAATGTTCGTCCAATCATACCCAACGATTGCCTACCTGTTCTCCGTGACATCATGACAAGATGCTGGGATCCCAACCCTGATGTTAGGCCACCATTTGCTGAAATTGTAGGAATGCTTGAGAATGCAGAGAATGAGATCATGACAACAGTTCGGAAGGCCCGGTTCAGGTGTTGCATGACTCAACCAATGACTGCTGACTGA

>Glyma08g03005.2   sequence type=CDS   gene model=Glyma08g03005   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGAAGGTGGTGCGAAATTCCCGGGAATAATAGATCTCAACAAGAATAATAACAACTACTATGATTTCTCTCAAGGCTTTTACCATAAGCTGGGGGAGGGTACCAATATGTCAATTGACAGCGTTGGGAGCTTACAGACAAGTAACGGCGGAGGATCTGTTGCGATGTCTATCGATAATAGCAGTGTTGGGTCCAATGATTCCCATACTCGCATGTTGGACCACCAAGGGTTACGGAGGCGTGCCAATGATAACTACTCTGTTGCACATAGTGCCAATCGTCGGGGAAGAGTCACCCATGCTTTGAGTGATGATGCTTTAGCTCAAGCTCTAATGGACAATAGTTCTCCGACTGAAGGGCTTGACAATTTTGATGAGTGGACAATTGATTTGAGGAAACTGAATATGGGTGAGCCTTTTGCTCAAGGAGCTTTTGGGAAACTCTACAGAGGTACTTACAATGGTGAAGATGTTGCTATTAAAATCTTGGAGAGGCCTGAAAATGATCCAGCAAAGGCTCAATTGATGGAGCAACAGTTCCAGCAGGAGGTCATGATGTTGGCCACACTAAAGCATCCTAACATAGTTCGTTTCATTGGTGCGTGCCGCAAGCCAATGGTATGGTGCATTGTAACTGAGTATGCCAAAGGTGGTTCGGTTCGACAATTTTTAATGAAGCGTCAAAACCGCTCAGTTCCCCTCAAATTGGCTGTCAAACAAGCTTTGGATGTTGCAAGGGGGATGGCTTATGTTCATGGCCTTTTATTGATCCACAGGGACTTGAAATCTGATAATCTTTTGATTTTTGGTGACAAGTCAATTAAAATTGCTGACTTTGGAGTTGCTCGTATTGAGGTGCAAACTGAAGGAATGACACCTGAGACTGGAACATACCGTTGGATGGCTCCGGAGATGATCCAGCATAGGCCTTACACACAAAAAGTGGATGTATATAGCTTTGGGATTGTTCTATGGGAACTCATTACCGGTATGCTTCCATTTCAGAACATGACAGCAGTACAGGCTGCATTTGCAGTTGTCAACAAAAATGTTCGTCCAATCATACCCAACGATTGCCTACCTGTTCTCCGTGACATCATGACAAGATGCTGGGATCCCAACCCTGATGTTAGGCCACCATTTGCTGAAATTGTAGGAATGCTTGAGAATGCAGAGAATGAGATCATGACAACAGTTCGGAAGGCCCGGTTCAGGTGTTGCATGACTCAACCAATGACTGCTGACTGA

Predicted protein sequences of Glyma08g03005

Limit To All Plant Sequences

>Glyma08g03005.1   sequence type=predicted peptide   gene model=Glyma08g03005   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEGGAKFPGIIDLNKNNNNYYDFSQGFYHKLGEGTNMSIDSVGSLQTSNGGGSVAMSIDNSSVGSNDSHTRMLDHQGLRRRANDNYSVAHSANRRGRVTHALSDDALAQALMDNSSPTEGLDNFDEWTIDLRKLNMGEPFAQGAFGKLYRGTYNGEDVAIKILERPENDPAKAQLMEQQFQQEVMMLATLKHPNIVRFIGACRKPMVWCIVTEYAKGGSVRQFLMKRQNRSVPLKLAVKQALDVARGMAYVHGLLLIHRDLKSDNLLIFGDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKNVRPIIPNDCLPVLRDIMTRCWDPNPDVRPPFAEIVGMLENAENEIMTTVRKARFRCCMTQPMTAD*

>Glyma08g03005.2   sequence type=predicted peptide   gene model=Glyma08g03005   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEGGAKFPGIIDLNKNNNNYYDFSQGFYHKLGEGTNMSIDSVGSLQTSNGGGSVAMSIDNSSVGSNDSHTRMLDHQGLRRRANDNYSVAHSANRRGRVTHALSDDALAQALMDNSSPTEGLDNFDEWTIDLRKLNMGEPFAQGAFGKLYRGTYNGEDVAIKILERPENDPAKAQLMEQQFQQEVMMLATLKHPNIVRFIGACRKPMVWCIVTEYAKGGSVRQFLMKRQNRSVPLKLAVKQALDVARGMAYVHGLLLIHRDLKSDNLLIFGDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKNVRPIIPNDCLPVLRDIMTRCWDPNPDVRPPFAEIVGMLENAENEIMTTVRKARFRCCMTQPMTAD*

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