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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55090 | AT | Annotation by Michelle Graham. TAIR10: carbon-nitrogen hydrolase family protein | chr1:20554857-20558188 FORWARD LENGTH=725 | SoyBase | E_val: 0 | ISS |
| GO:0006807 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrogen compound metabolic process | SoyBase | N/A | ISS |
| GO:0009435 | GO-bp | Annotation by Michelle Graham. GO Biological Process: NAD biosynthetic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003952 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD+ synthase (glutamine-hydrolyzing) activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016810 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | SoyBase | N/A | ISS |
| KOG2303 | KOG | Predicted NAD synthase, contains CN hydrolase domain | JGI | ISS | |
| PTHR23090 | Panther | NH(3)/GLUTAMINE-DEPENDENT NAD(+) SYNTHETASE | JGI | ISS | |
| PTHR23090:SF1 | Panther | GLUTAMINE-DEPENDENT NAD(+) SYNTHETASE | JGI | ISS | |
| PF00795 | PFAM | Carbon-nitrogen hydrolase | JGI | ISS | |
| PF02540 | PFAM | NAD synthase | JGI | ISS | |
| UniRef100_D7KM52 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Carbon-nitrogen hydrolase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KM52_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KPN4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KPN4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g02950 not represented in the dataset |
Glyma08g02950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g36610 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g025800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g02950.1 sequence type=CDS gene model=Glyma08g02950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGCTATTGAAGGTTGCCGCATCTAATCTGAACCAATGGGCGATGGACTTCGATTGCAACGCCAAGCAAATCAAAGAGTCCATAGCGAAGGCCAAAGAAGCCGGCGCTGCCATTAGGCTCGGACCCGAACTCGAGATTCCTGGTTATGGCTGCGAAGACCACTTCTTAGAGCTCGACACAGTTAACCATTCATGGGAGTGCCTGAAAGATTTACTGCTTGGAGATTGGACTGATGGCATTGTGTGTAGCTTTGGCATGCCCGTTATCAAAGGCTCCGAGCGCTACAATTGTCAGGTTTTCTGTCTCAATCGAAAGATTATTATGATACGACCCAAGATGTCTCTTGCCAATGATGGTAATTATAGAGAACTGAGATGGTTCACTGCTTGGAAGCAGAGGGATCAACTCGTCGATTTTCAGTTGCCACCTGAATTTTCCCAGGCAATAGGCCAAAATTCTGTTCCATTCGGTTATGGCTTCATTAAGTTTCAAGACACAGCTATTGCGGCTGAAGTTTGTGAAGAGCTTTTTACTCCAACTCCCCCTCATTCTGAACTTGCATTGAATGGGGTTGAAGTGTTTATGAATGCAAGTGGAAGTCACCACCAACTTAGAAAGCTCGATGTTCGTCTTCGTGCTTTTATAGGTGCCACTCAAACTCGCGGAGGGGTTTACATCTATAGTAATCACCAAGGCTGTGATGGCAGTCGCCTTTACTATGATGGCTGTGCTAGTGTTGTGGTAAATGGAGACGTCGTCGCTCAGGGTTCACAATTTTCTTTAAAAGATGTTGAAGTTGTGGTTGCTCAAATAGATCTAGATGTGGTTGCAAGTCTTAGAGGATCTTTAAGTAGCTTCCAAGAGCAAGCAAGTTGTAAAACAAAGGTTCCTTCAGTGGAAGTACCTTTCAGTCTCTGTCTTCCTTTTAACCTTAAAACACACCTTTCTCTCCCACTTAAGATAAAGTACCACACTCCTGAGGAGGAAATAGCATTTGGACCTGGTTGCTGGTTATGGGACTACTTAAGAAGAAGTGGAGCATCTGGTTTTCTGCTTCCTCTTTCTGGTGGAGCAGACAGTTCCTCCGTCGCTGCAATTGTTGGGTGCATGTGCCAGCTGGTTGTGAAAGAAATTGCAAATGGGGACGAGCAAGTTAAAGCTGATGCAATACGAATAGGAAACTATAAGGATGGCCTGTATCCTACAGACAGCAGAGAATTTGCTAAACGAATATTCTATACTGTGTTTATGGGATCTGAAAACAGTTCCGAAATGACAAGGTCACGAGCCAAGGTGCTGGCTGATGAAATTGGTTCATGGCACCTTGATGTTAGCATTGACGTAGTTGTGTCTGCTTTTTTGTCATTGTTCCAAACACTTACAGGAAAGCGACCACGGTATAAGGTAGATGGTGGATCTAATGTTGAAAATTTAAGCTTGCAGAACATTCAAGCTCGAATCAGAATGGTGCTAGCTTTCATGTTAGCATCACTCTTACCTTGGGTTCACAGCAAGCCTGGGTTTTATCTTGTCTTGGGGAGCTCCAATGTGGATGAAGGGTTACGTGGTTACTTGACCAAGTATGATTGCAGCTCAGCAGATATAAATCCAATTGGTAGTATAAGTAAGCAAGACCTTCGGGCATTCTTGCAATGGGCAGCCATCCATCTTGGTTACTCATCTTTGGCAGATATTGAAGCAGCTCCACCCACAGCTGAACTGGAGCCTATACGTTCTAATTACAGTCAGCTTGATGAAGTCGATATGGGAATGACTTACGAGGAGCTATCAGTTTATGGAAGACTACGAAAAATTTTCCGTTGTGGTCCAGTTTCCATGTTCCAGAATCTATGCTACAGATGGGGTGCAAGATTGACACCATCACAAGTGGCTGAAAAAGTAAAACACTTCTTCAAGTATTATTCTATCAATCGACACAAAATGACTGTCTTGACGCCTTCCTACCATGCTGAGAGTTATTCACCAGAGGATAATAGGTTTGATCTTCGCCAGTTTCTCTATAATGCAAGATGGCCATATCAATTTAGGAAAATTGATGAACTTGTAAGTGAATTGGATGTTAAAGATGTTAAAGATTCAGGAGACCATGAGGCAATGGCAGCTACATCTGATGGTGTTGGTGGGATGGGAGTTGCCGCAGCTGGTTCAGGCAATCCTAATGTTGGATTGTAA
>Glyma08g02950.1 sequence type=predicted peptide gene model=Glyma08g02950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRLLKVAASNLNQWAMDFDCNAKQIKESIAKAKEAGAAIRLGPELEIPGYGCEDHFLELDTVNHSWECLKDLLLGDWTDGIVCSFGMPVIKGSERYNCQVFCLNRKIIMIRPKMSLANDGNYRELRWFTAWKQRDQLVDFQLPPEFSQAIGQNSVPFGYGFIKFQDTAIAAEVCEELFTPTPPHSELALNGVEVFMNASGSHHQLRKLDVRLRAFIGATQTRGGVYIYSNHQGCDGSRLYYDGCASVVVNGDVVAQGSQFSLKDVEVVVAQIDLDVVASLRGSLSSFQEQASCKTKVPSVEVPFSLCLPFNLKTHLSLPLKIKYHTPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGNYKDGLYPTDSREFAKRIFYTVFMGSENSSEMTRSRAKVLADEIGSWHLDVSIDVVVSAFLSLFQTLTGKRPRYKVDGGSNVENLSLQNIQARIRMVLAFMLASLLPWVHSKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRAFLQWAAIHLGYSSLADIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKIFRCGPVSMFQNLCYRWGARLTPSQVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVSELDVKDVKDSGDHEAMAATSDGVGGMGVAAAGSGNPNVGL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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