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Report for Sequence Feature Glyma08g02940

Feature Type:gene_model
Chromosome:Gm08
Start:2029878
stop:2033833
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g02940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42020AT Annotation by Michelle Graham. TAIR10: Heat shock protein 70 (Hsp 70) family protein | chr5:16807697-16810480 REVERSE LENGTH=668 SoyBaseE_val: 0ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0010197GO-bp Annotation by Michelle Graham. GO Biological Process: polar nucleus fusion SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005788GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum lumen SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016592GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mediator complex SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG0100 KOG Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily JGI ISS
PTHR19375Panther HEAT SHOCK PROTEIN 70KDA JGI ISS
PF00012PFAM Hsp70 protein JGI ISS
UniRef100_B9RYP6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein, putative n=1 Tax=Ricinus communis RepID=B9RYP6_RICCO SoyBaseE_val: 0ISS
UniRef100_I1KPN3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KPN3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g02940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g02940
ParalogEvidenceComments
Glyma05g36620 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g02940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g025700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g02940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g02940
>Glyma08g02940.1   sequence type=CDS   gene model=Glyma08g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGCTCGTGGGCACGCCGTTCTCTGATTGTTCTAGCCATCATTTCCTTCGGATGTCTATTTGCGATTTCCATTGCTAAGGAGGAAGCCACCAAGTTAGGGACGGTCATCGGCATTGATCTTGGAACAACCTATTCATGTGTCGGTGTTTACAAGAATGGCCATGTTGAAATCATAGCCAACGACCAAGGTAACCGTATCACCCCATCGTGGGTTGCTTTCACCGACAGTGAGAGACTCATTGGGGAGGCTGCCAAGAATCAGGCAGCTGTCAACCCAGAAAGGACCATCTTTGATGTCAAGAGACTTATCGGAAGAAAGTTCGAAGATAAGGAAGTTCAAAAAGACATGAAGCTTGTTCCTTATAAGATTGTCAACAAGGATGGAAAACCTTACATTCAGGTGAAAATTAAGGATGGTGAGACCAAGGTGTTCAGCCCTGAGGAAATCAGTGCCATGGTTCTGATCAAGATGAAGGAAACTGCGGAAGCATTCCTCGGGAAGAAAATTAATGATGCTGTGGTCACTGTCCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGTCTCAATGTTGCTAGAATTATCAACGAACCCACTGCCGCTGCCATTGCCTATGGATTGGACAAGAAAGGTGGCGAGAAGAACATTCTAGTCTTTGATCTTGGTGGTGGGACCTTTGATGTCAGTATCTTGACAATTGATAACGGTGTTTTTGAAGTTCTTGCTACAAATGGAGATACTCATCTTGGAGGTGAGGATTTTGATCAAAGAATAATGGAGTACTTCATTAAATTGATCAAGAAAAAGCATGGAAAGGATATTAGCAAGGACAACAGAGCACTTGGAAAGCTGAGGAGAGAGGCTGAGCGTGCAAAGAGGGCACTCAGCAGCCAGCACCAGGTCCGCGTGGAAATTGAATCACTTTTTGATGGTGTTGATTTTTCTGAGCCACTCACCCGAGCTAGGTTTGAGGAGTTGAACAATGACTTGTTCCGGAAGACCATGGGTCCAGTGAAGAAGGCTATGGAAGATGCTGGATTACAGAAGAGTCAGATTGATGAGATTGTTCTTGTTGGTGGAAGCACAAGGATTCCAAAGGTACAACAGCTTTTGAAGGACTACTTTGATGGAAAGGAGCCAAACAAGGGGGTCAACCCTGATGAAGCAGTTGCCTATGGTGCTGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGGTGGAGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCGACCAAGAAATCTCAAGTGTTCACCACCTACCAGGACCAGCAGACTACCGTCTCCATTCAGGTTTTCGAAGGTGAGAGGAGTCTCACAAAGGATTGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCTAAATGTGAAGGCAGAAGACAAGGGAACTGGTAAATCAGAAAAGATCACCATTACAAACGAAAAGGGACGTCTTAGCCAGGAAGAAATAGATAGAATGGTTCGTGAAGCAGAAGAGTTTGCCGAGGAAGACAAGAAGGTGAAGGAGAGGATCGATGCTCGCAACAGTCTTGAAACCTACGTATACAACATGAAGAATCAGGTCAGTGACAAGGACAAGCTCGCGGACAAGTTGGAGTCAGATGAAAAGGAGAAAATTGAGACTGCAGTGAAAGAAGCATTGGAATGGCTGGATGACAACCAGAGTGTGGAGAAAGAAGATTATGAAGAGAAGCTGAAGGAGGTTGAAGCCGTTTGCAACCCAATCATCAGTGCTGTGTATCAGAGATCAGGAGGAGCCCCAGGTGGTGCAGGTGGCGAAGGCGAAGACGAGGATGATTCTCACGATGAGCTCTAG
Predicted protein sequences of Glyma08g02940
>Glyma08g02940.1   sequence type=predicted peptide   gene model=Glyma08g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGSWARRSLIVLAIISFGCLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFEDKEVQKDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMVLIKMKETAEAFLGKKINDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLQKSQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNEKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQVSDKDKLADKLESDEKEKIETAVKEALEWLDDNQSVEKEDYEEKLKEVEAVCNPIISAVYQRSGGAPGGAGGEGEDEDDSHDEL*






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