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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G23920 | AT | Annotation by Michelle Graham. TAIR10: UDP-D-glucose/UDP-D-galactose 4-epimerase 2 | chr4:12431416-12433666 FORWARD LENGTH=350 | SoyBase | E_val: 0 | ISS |
| GO:0006012 | GO-bp | Annotation by Michelle Graham. GO Biological Process: galactose metabolic process | SoyBase | N/A | ISS |
| GO:0042546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0044237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular metabolic process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0003978 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-glucose 4-epimerase activity | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| GO:0050662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme binding | SoyBase | N/A | ISS |
| KOG1371 | KOG | UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase | JGI | ISS | |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PTHR10366:SF39 | Panther | CDP-3, 6-DIDEOXY-D-GLYCERO-L-GLYCERO-4-HEXULOSE-4-REDUCTASE | JGI | ISS | |
| PF01370 | PFAM | NAD dependent epimerase/dehydratase family | JGI | ISS | |
| UniRef100_I1KPK4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KPK4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O65781 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucose 4-epimerase GEPI48 n=1 Tax=Cyamopsis tetragonoloba RepID=GALE2_CYATE | SoyBase | E_val: 0 | ISS |
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Glyma08g02690 not represented in the dataset |
Glyma08g02690 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g36850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g023100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g02690.4 sequence type=transcript gene model=Glyma08g02690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTAAACCTAAGACTTGATTATGAACGTGTCAGTCACAGAAATCTCGTCTTCTCCGAAAACGTCCTGCGCGTAACAAACTCTTATATAACAACACCCTTCTTTTTCTCTTTTCAGTTTACGTTTACGTTTACGCATTCACTCGCTTATATCGTCTTCCTCCGTTTTTTTCTTTCTCGTGAAACGCTTCTTCCAACTATGCCTGCCCCATTGATTCTGGTTACTGGCGGAGCCGGTTACATCGGTAGCCACACCATCCTTCAGCTTCTCTTCGGCGGTTACCATGTCTTCGCCGTCGACAACTTCGACAATTCTTCCGAAACCGCCATCAACAGAGTCAAGGAACTCGCCGGAGAATTAGCAAATAACCTTTCCTTTTGCAAGCTTGACTTGCGGGACAGAGCTGCCCTCGAGAAAATATTTTCAACCGTAAAGTTTGATGCCGTCATACATTTTGCTGGGCTTAAAGCAGTGGGTGAAAGCGTGAAGAAACCACTGCTCTACTTTGACAACAATTTGATAGGGACAATCGTTCTATTTGAAGTCATGGCTGCCCACGGATGCAAGAAGCTTGTGTTCTCATCTTCAGCAACTGTATATGGGTGGCCAAAGGAGGTCCCATGTACCGAAGAGTTCCCTTTGTCAGCAACAAACCCATATGGACGAACCAAGCTTTTCATCGAAGAAATTTGTCGCGATATCCACCGTGCAGATTCAGATTGGACAGTTATACTATTGAGATACTTCAACCCAGTTGGTGCACATCCCAGTGGTTATATTGGTGAGGATCCTCTTGGAATTCCAAACAATCTCATGCCCTTTGTTCAACAAGTGGCAGTTGGCAGACGCCCTGCATTGACAGTTTTTGGAAGCGATTATAAAACAACTGACGGCACTGGAGTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCTGCGTTGCGTAAACTGGATGATCCTAAAATAGGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTAAACGCTTTTGAACAGGCCTCTGGAAAGGTAACAGACTTATAGCTTTATGTCTGTTCTTGTATCTACTATCCATTATATTATAAACCCTGCTGCAATTTTTTGGCATTTTTATAGAAATGCAATTTGGATCTCATTCTGGACTTCAAATTTGACAGTGTAACCATTCTTCTGACATACTAAATCTCTCTTATCAGTTGTGCTCTGATAAGATACAATGAAATGGAAGAAATGTGAATCAAGCTCAAACAAAGTAGAATTTTTGGACTGTCAATTTTCATGCAATATGTCCCGGTGCATTCTTGATTCTTTTGAACCTCAACTACATGTTTTGTCCCTCTGACTGGTAGACACAACATGAAAGTGGGAACAAAAAATTTAGAAAACAAACATCTTCCCTTCCTACGCAACGGATTTGTTCAATTTCATGTTTAAGTTGTTTAAATAAATAAACCTAAAACATTTTGAACCAACTCGTTTATGCTATTCTTCGGTACCTGACTAATTTAATCTTTGTACAATTTATTAATGCTCAGAAAATTCCACTTGCAATGGCGGGTCGGAGACCTGGTGATGCTGAAATTGTTTATGCATCAACAGAAAAAGCGGAAAGAGAACTTAAATGGAAGACTAAATATTGCATCGATGATATGTGCCGAGATCAATGGAATTGGGCAAGGAAAAACCCTTATGGCTATGGTGGATCTGAAGATTCCTCCAATTGATGTCGATTATTGTTGGATAATATAGCCATACATGTTCTCTTTTGGGGTCTTTTTAACCCTGTCAACCAATAGGTCCCTAAAGTTTTTGTTTAGCTATTCTAAGGTGGAAAATCGTTTCCTAATTTATTATGAATTCTAATAATGTGGTAAACAAGTAGTGGTTTAGTTTACTTTTACGATTATTTAGGTTCCACCTCACATGATATTGAATGGGGGTATTCTCTCATGTTCTTCAATTTAAACTACACATCATAGAGTTTGACTAACCGGTATAATCTTACCTTACCGCATTATCCACAATAATAAAGTTTTAAATAGCATTATATGTTTTGATTTTC
>Glyma08g02690.3 sequence type=CDS gene model=Glyma08g02690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTAAACCTAAGACTTGATTATGAACGTGTCAGTCACAGAAATCTCGTCTTCTCCGAAAACGTCCTGCGCGTAACAAACTCTTATATAACAACACCCTTCTTTTTCTCTTTTCAGTTTACGTTTACGTTTACGCATTCACTCGCTTATATCGTCTTCCTCCGTTTTTTTCTTTCTCGTGAAACGCTTCTTCCAACTATGCCTGCCCCATTGATTCTGGTTACTGGCGGAGCCGGTTACATCGGTAGCCACACCATCCTTCAGCTTCTCTTCGGCGGTTACCATGTCTTCGCCGTCGACAACTTCGACAATTCTTCCGAAACCGCCATCAACAGAGTCAAGGAACTCGCCGGAGAATTAGCAAATAACCTTTCCTTTTGCAAGCTTGACTTGCGGGACAGAGCTGCCCTCGAGAAAATATTTTCAACCGTAAAGTTTGATGCCGTCATACATTTTGCTGGGCTTAAAGCAGTGGGTGAAAGCGTGAAGAAACCACTGCTCTACTTTGACAACAATTTGATAGGGACAATCGTTCTATTTGAAGTCATGGCTGCCCACGGATGCAAGAAGCTTGTGTTCTCATCTTCAGCAACTGTATATGGGTGGCCAAAGGAGGTCCCATGTACCGAAGAGTTCCCTTTGTCAGCAACAAACCCATATGGACGAACCAAGCTTTTCATCGAAGAAATTTGTCGCGATATCCACCGTGCAGATTCAGATTGGACAGTTATACTATTGAGATACTTCAACCCAGTTGGTGCACATCCCAGTGGTTATATTGGTGAGGATCCTCTTGGAATTCCAAACAATCTCATGCCCTTTGTTCAACAAGTGGCAGTTGGCAGACGCCCTGCATTGACAGTTTTTGGAAGCGATTATAAAACAACTGACGGCACTGGAGTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCTGCGTTGCGTAAACTGGATGATCCTAAAATAGGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTAAACGCTTTTGAACAGGCCTCTGGAAAGAAAATTCCACTTGCAATGGCGGGTCGGAGACCTGGTGATGCTGAAATTGTTTATGCATCAACAGAAAAAGCGGAAAGAGAACTTAAATGGAAGACTAAATATTGCATCGATGATATGTGCCGAGATCAATGGAATTGGGCAAGGAAAAACCCTTATGGCTATGGTGGATCTGAAGATTCCTCCAATTGA >Glyma08g02690.4 sequence type=CDS gene model=Glyma08g02690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTAAACCTAAGACTTGATTATGAACGTGTCAGTCACAGAAATCTCGTCTTCTCCGAAAACGTCCTGCGCGTAACAAACTCTTATATAACAACACCCTTCTTTTTCTCTTTTCAGTTTACGTTTACGTTTACGCATTCACTCGCTTATATCGTCTTCCTCCGTTTTTTTCTTTCTCGTGAAACGCTTCTTCCAACTATGCCTGCCCCATTGATTCTGGTTACTGGCGGAGCCGGTTACATCGGTAGCCACACCATCCTTCAGCTTCTCTTCGGCGGTTACCATGTCTTCGCCGTCGACAACTTCGACAATTCTTCCGAAACCGCCATCAACAGAGTCAAGGAACTCGCCGGAGAATTAGCAAATAACCTTTCCTTTTGCAAGCTTGACTTGCGGGACAGAGCTGCCCTCGAGAAAATATTTTCAACCGTAAAGTTTGATGCCGTCATACATTTTGCTGGGCTTAAAGCAGTGGGTGAAAGCGTGAAGAAACCACTGCTCTACTTTGACAACAATTTGATAGGGACAATCGTTCTATTTGAAGTCATGGCTGCCCACGGATGCAAGAAGCTTGTGTTCTCATCTTCAGCAACTGTATATGGGTGGCCAAAGGAGGTCCCATGTACCGAAGAGTTCCCTTTGTCAGCAACAAACCCATATGGACGAACCAAGCTTTTCATCGAAGAAATTTGTCGCGATATCCACCGTGCAGATTCAGATTGGACAGTTATACTATTGAGATACTTCAACCCAGTTGGTGCACATCCCAGTGGTTATATTGGTGAGGATCCTCTTGGAATTCCAAACAATCTCATGCCCTTTGTTCAACAAGTGGCAGTTGGCAGACGCCCTGCATTGACAGTTTTTGGAAGCGATTATAAAACAACTGACGGCACTGGAGTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCTGCGTTGCGTAAACTGGATGATCCTAAAATAGGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTAAACGCTTTTGAACAGGCCTCTGGAAAGGTAACAGACTTATAG
>Glyma08g02690.3 sequence type=predicted peptide gene model=Glyma08g02690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELNLRLDYERVSHRNLVFSENVLRVTNSYITTPFFFSFQFTFTFTHSLAYIVFLRFFLSRETLLPTMPAPLILVTGGAGYIGSHTILQLLFGGYHVFAVDNFDNSSETAINRVKELAGELANNLSFCKLDLRDRAALEKIFSTVKFDAVIHFAGLKAVGESVKKPLLYFDNNLIGTIVLFEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSATNPYGRTKLFIEEICRDIHRADSDWTVILLRYFNPVGAHPSGYIGEDPLGIPNNLMPFVQQVAVGRRPALTVFGSDYKTTDGTGVRDYIHVLDLADGHIAALRKLDDPKIGCEVYNLGTGKGTSVLEMVNAFEQASGKKIPLAMAGRRPGDAEIVYASTEKAERELKWKTKYCIDDMCRDQWNWARKNPYGYGGSEDSSN* >Glyma08g02690.4 sequence type=predicted peptide gene model=Glyma08g02690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELNLRLDYERVSHRNLVFSENVLRVTNSYITTPFFFSFQFTFTFTHSLAYIVFLRFFLSRETLLPTMPAPLILVTGGAGYIGSHTILQLLFGGYHVFAVDNFDNSSETAINRVKELAGELANNLSFCKLDLRDRAALEKIFSTVKFDAVIHFAGLKAVGESVKKPLLYFDNNLIGTIVLFEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSATNPYGRTKLFIEEICRDIHRADSDWTVILLRYFNPVGAHPSGYIGEDPLGIPNNLMPFVQQVAVGRRPALTVFGSDYKTTDGTGVRDYIHVLDLADGHIAALRKLDDPKIGCEVYNLGTGKGTSVLEMVNAFEQASGKVTDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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