SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G64200 | AT | Annotation by Michelle Graham. TAIR10: vacuolar H+-ATPase subunit E isoform 3 | chr1:23828537-23830002 REVERSE LENGTH=237 | SoyBase | E_val: 1.00E-122 | ISS |
| GO:0015986 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP synthesis coupled proton transport | SoyBase | N/A | ISS |
| GO:0015991 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP hydrolysis coupled proton transport | SoyBase | N/A | ISS |
| GO:0005753 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial proton-transporting ATP synthase complex | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0033178 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting two-sector ATPase complex, catalytic domain | SoyBase | N/A | ISS |
| GO:0046961 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: proton-transporting ATPase activity, rotational mechanism | SoyBase | N/A | ISS |
| KOG1664 | KOG | Vacuolar H+-ATPase V1 sector, subunit E | JGI | ISS | |
| PTHR11583 | Panther | VACUOLAR ATP SYNTHASE SUBUNIT E | JGI | ISS | |
| PF01991 | PFAM | ATP synthase (E/31 kDa) subunit | JGI | ISS | |
| UniRef100_I1KPH7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KPH7_SOYBN | SoyBase | E_val: 3.00E-171 | ISS |
| UniRef100_Q84T14 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar ATPase subunit E (Fragment) n=1 Tax=Phaseolus acutifolius RepID=Q84T14_PHAAT | SoyBase | E_val: 2.33E-156 | ISS |
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Glyma08g02420 not represented in the dataset |
Glyma08g02420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g020600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g02420.1 sequence type=CDS gene model=Glyma08g02420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACGACGCAGACGTCTCAAAGCAAATCCAGCAGATGGTTCGGTTCATCCGCCAGGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAGGAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACCAGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGATTGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAAGATGACGTGATCAGTTCCATGAAAGAAGCTGCATCCAAGGAACTGTTGCATGTGAGTCATCATCATCATTTGACTTTGACTCATCATGATCATGTGTACAGAAACCTTCTGAAAGATCTCATTATTCAGTGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGCATGTGCTGGATTCAGCTGCACAGGAGTATGCTGAGAAAGTAAATGTTGATCCCCCAGAGATCATTGTTGACAACCAAGTCTATCTTCCACCTGGACCCCATCATCACAACTCTCATGATCTCTACTGCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGA
>Glyma08g02420.1 sequence type=predicted peptide gene model=Glyma08g02420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKTRQEYERKERQVEIRKKIEYSMQLNASRIKVLQAQDDVISSMKEAASKELLHVSHHHHLTLTHHDHVYRNLLKDLIIQCLLRLKEPSVLLRCRKDDLHLVEHVLDSAAQEYAEKVNVDPPEIIVDNQVYLPPGPHHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRNQLFGQVVA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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