Glyma08g02390 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma08g02390): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma08g02390): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma08g02390

Feature Type:	gene_model
Chromosome:	Gm08
Start:	1656464
stop:	1659837
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g02390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G11150	AT	Annotation by Michelle Graham. TAIR10: vacuolar ATP synthase subunit E1 \| chr4:6800091-6801696 FORWARD LENGTH=230	SoyBase	E_val: 5.00E-124	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0007033	GO-bp	Annotation by Michelle Graham. GO Biological Process: vacuole organization	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0015986	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP synthesis coupled proton transport	SoyBase	N/A	ISS
GO:0015991	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP hydrolysis coupled proton transport	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0000325	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole	SoyBase	N/A	ISS
GO:0005753	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial proton-transporting ATP synthase complex	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0009705	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0033178	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting two-sector ATPase complex, catalytic domain	SoyBase	N/A	ISS
GO:0046961	GO-mf	Annotation by Michelle Graham. GO Molecular Function: proton-transporting ATPase activity, rotational mechanism	SoyBase	N/A	ISS
KOG1664	KOG	Vacuolar H+-ATPase V1 sector, subunit E	JGI		ISS
PTHR11583	Panther	VACUOLAR ATP SYNTHASE SUBUNIT E	JGI		ISS
PF01991	PFAM	ATP synthase (E/31 kDa) subunit	JGI		ISS
UniRef100_I1KPH2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KPH2_SOYBN	SoyBase	E_val: 8.00E-166	ISS
UniRef100_Q84T14	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar ATPase subunit E (Fragment) n=1 Tax=Phaseolus acutifolius RepID=Q84T14_PHAAT	SoyBase	E_val: 5.00E-146	ISS

Expression Patterns of Glyma08g02390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g02390 not represented in the dataset	Glyma08g02390 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g02390

Paralog	Evidence	Comments
Glyma05g37190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g02390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g020300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g02390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g02390

Limit To All Plant Sequences

>Glyma08g02390.2   sequence type=transcript   gene model=Glyma08g02390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGCATATAAGAGAGGTGAGGTGAACTCGTGAGGGTTGTGGTAGTTTGGCAGCGACACGTATCTTCATCAATAATCGCAGAAGCAGTTTCCGGTGCATCTCATCGTCTTCCAAAATGAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCAAGATGACGTGATCAGTTCCATGAAAGAAGCTGCATCCAAGGAACTTTTGAATGTCAGTCATCACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGAATGTGCTGGATTCAGCTGCTCAGGAGTATGCTGAGAAAGCAAATGTTGATCCCCCAGAGATCATTGTTGACAACCAAGTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGGTAAAAAAGAACTGAGTATAGCAGTTCTTATTCTGTGATGTTAGATATTTGTTGCTGAATTGTTTTTACTGTTGACTCTCGTATTGCTCTCACTCAAATAACTTGTATGCAGCATTTATGATTC

>Glyma08g02390.3   sequence type=transcript   gene model=Glyma08g02390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGCATATAAGAGAGGTGAGGTGAACTCGTGAGGGTTGTGGTAGTTTGGCAGCGACACGTATCTTCATCAATAATCGCAGAAGCAGTTTCCGGTGCATCTCATCGTCTTCCAAAATGAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCAAGATGACGTGATCAGTTCCATGAAAGAAGCTGCATCCAAGGAACTTTTGAATGTCAGTCATCACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGAATGTGCTGGATTCAGCTGCTCAGGAGTATGCTGAGAAAGCAAATGTTGATCCCCCAGAGATCATTGTTGACAACCAAGTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGGTAATGTTCATGTTGTAATTATATCTTAACTAACTGTTTGGCCTTGCTTTCTTACCTTATTCTTTACCTTTTTTTTTTCTTGATTAATTATAATTTAAAATTATCTTCTGATGAAAAGGTATCAGTTTCAAATCTTGAGATTAATAAAATCATATTAGCTTTTAACTGCTTTGATATCAAATTTCAGTTGTAGC

Coding sequences of Glyma08g02390

Limit To All Plant Sequences

>Glyma08g02390.1   sequence type=CDS   gene model=Glyma08g02390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCAAGATGACGTGATCAGTTCCATGAAAGAAGCTGCATCCAAGGAACTTTTGAATGTCAGTCATCACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGAATGTGCTGGATTCAGCTGCTCAGGAGTATGCTGAGAAAGCAAATGTTGATCCCCCAGAGATCATTGTTGACAACCAAGTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGA

>Glyma08g02390.2   sequence type=CDS   gene model=Glyma08g02390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCAAGATGACGTGATCAGTTCCATGAAAGAAGCTGCATCCAAGGAACTTTTGAATGTCAGTCATCACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGAATGTGCTGGATTCAGCTGCTCAGGAGTATGCTGAGAAAGCAAATGTTGATCCCCCAGAGATCATTGTTGACAACCAAGTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGGTAAAAAAGAACTGA

>Glyma08g02390.3   sequence type=CDS   gene model=Glyma08g02390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCAAGATGACGTGATCAGTTCCATGAAAGAAGCTGCATCCAAGGAACTTTTGAATGTCAGTCATCACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGAATGTGCTGGATTCAGCTGCTCAGGAGTATGCTGAGAAAGCAAATGTTGATCCCCCAGAGATCATTGTTGACAACCAAGTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGGTAA

Predicted protein sequences of Glyma08g02390

Limit To All Plant Sequences

>Glyma08g02390.1   sequence type=predicted peptide   gene model=Glyma08g02390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKERQVEIRKKIEYSMQLNASRIKVLQAQDDVISSMKEAASKELLNVSHHHDDHVYRNLLKDLIVQCLLRLKEPSVLLRCRKDDLHLVENVLDSAAQEYAEKANVDPPEIIVDNQVYLPPGLTHQNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQIVA*

>Glyma08g02390.2   sequence type=predicted peptide   gene model=Glyma08g02390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKERQVEIRKKIEYSMQLNASRIKVLQAQDDVISSMKEAASKELLNVSHHHDDHVYRNLLKDLIVQCLLRLKEPSVLLRCRKDDLHLVENVLDSAAQEYAEKANVDPPEIIVDNQVYLPPGLTHQNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEVKKN*

>Glyma08g02390.3   sequence type=predicted peptide   gene model=Glyma08g02390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKERQVEIRKKIEYSMQLNASRIKVLQAQDDVISSMKEAASKELLNVSHHHDDHVYRNLLKDLIVQCLLRLKEPSVLLRCRKDDLHLVENVLDSAAQEYAEKANVDPPEIIVDNQVYLPPGLTHQNSHDLYW*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain