SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G23690 | AT | Annotation by Michelle Graham. TAIR10: Disease resistance-responsive (dirigent-like protein) family protein | chr4:12339152-12339715 REVERSE LENGTH=187 | SoyBase | E_val: 1.00E-58 | ISS |
| GO:0006084 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process | SoyBase | N/A | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0009807 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lignan biosynthetic process | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0016132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0050790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:1901599 | GO-bp | Annotation by Michelle Graham. GO Biological Process: (-)-pinoresinol biosynthetic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0042349 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: guiding stereospecific synthesis activity | SoyBase | N/A | ISS |
| PTHR21495 | Panther | NUCLEOPORIN-RELATED | JGI | ISS | |
| PTHR21495:SF5 | Panther | DISEASE RESISTANCE RESPONSE PROTEIN-RELATED | JGI | ISS | |
| PF03018 | PFAM | Dirigent-like protein | JGI | ISS | |
| UniRef100_B9RCK7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance response protein, putative n=1 Tax=Ricinus communis RepID=B9RCK7_RICCO | SoyBase | E_val: 6.00E-98 | ISS |
| UniRef100_I1KPG9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KPG9_SOYBN | SoyBase | E_val: 9.00E-146 | ISS |
|
Glyma08g02330 not represented in the dataset |
Glyma08g02330 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g37230 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g019900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g02330.2 sequence type=CDS gene model=Glyma08g02330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGTTGTTCAGTTTAAACTTGAAAGTCTTGACACGAATATATTTAATTAATGGTAACTTTAGTGTATCCGTGAAGTCTAGACTGCTTATAAAATCCAATTTCGTGACACACATTATTGAGCTAGCCAGCCAAGTAATATTCAATAAAAATATGGAACTGACGAGGCTCATTTCGGTTCTCTTCTTCTTGCTAGTGATCACGGTGGGATCTTCTGCTTCTCCACAGCATTGGAGAAAAAAAAGGGTTCGCGAGCCGTGCAAGAAGTTGGTGTTTTATTTCCACGACATAATTTACAACGGCCACAATTCCAAGAATGCCACTTCCGCAATTGTTGGAACACCCGCATGGGGAAACAGGACCATACTAGCGGGGCAGAACCACTTCGGTGACTTGGTTGTGTTCGATGACCCCATCACCTTGGACAACAACTTGCACTCGCCACCGGTTGGACGTGCCCAAGGGTTTTACGTTTACGATAAGAAGGAGATTTTCACCGCTTGGCTTGGCTTCTCTTTTGTCTTCAACTCTACCCACCATAGAGGTAGCATTAACTTCGCTGGTGCTGACCCTTTGATGAATAAGACCAGGGACATTTCGGTAATTGGAGGGACAGGTGACTTCTTCATGACTAGGGGTGTCGCCACTCTCTCCACGGATGCATTTGAAGGGGAAGTTTATTTCAGGCTTCGTGCGGATATTAACTTGTTCGAATGTTGGTGA
>Glyma08g02330.2 sequence type=predicted peptide gene model=Glyma08g02330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLFSLNLKVLTRIYLINGNFSVSVKSRLLIKSNFVTHIIELASQVIFNKNMELTRLISVLFFLLVITVGSSASPQHWRKKRVREPCKKLVFYFHDIIYNGHNSKNATSAIVGTPAWGNRTILAGQNHFGDLVVFDDPITLDNNLHSPPVGRAQGFYVYDKKEIFTAWLGFSFVFNSTHHRGSINFAGADPLMNKTRDISVIGGTGDFFMTRGVATLSTDAFEGEVYFRLRADINLFECW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
