Glyma08g01960 - SoyBase

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Report for Sequence Feature Glyma08g01960

Feature Type:	gene_model
Chromosome:	Gm08
Start:	1285339
stop:	1288472
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g01960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G41350	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:16542026-16543092 REVERSE LENGTH=212	SoyBase	E_val: 3.00E-68	ISS
GO:0006914	GO-bp	Annotation by Michelle Graham. GO Biological Process: autophagy	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1493	KOG	Anaphase-promoting complex (APC), subunit 11	JGI		ISS
PTHR22937	Panther	RING FINGER CONTAINING PROTEIN	JGI		ISS
PTHR22937:SF23	Panther		JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_B9RCE8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RCE8_RICCO	SoyBase	E_val: 5.00E-82	ISS
UniRef100_I1KPD0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KPD0_SOYBN	SoyBase	E_val: 2.00E-155	ISS

Expression Patterns of Glyma08g01960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g01960 not represented in the dataset	Glyma08g01960 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g01960

Paralog	Evidence	Comments
Glyma05g37620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g01960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g016300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g01960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g01960

Limit To All Plant Sequences

>Glyma08g01960.5   sequence type=transcript   gene model=Glyma08g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGAGGGAGAGTAGTAGAGAAGAAGCGGTGGATGTTCCCTCTTTCTCCGTGATGTCATAGAATGGCGTATCCTCGTTATTATCTAGTTATTTATTTATTTGATGTTTATCATTAAAGAACCCCGGACCCGGATCAAAGAAAATTTAGTTAACTGAAGTGAACGGTTGAGATGTGGGGAAGAATGACGAAAGCGAATCAAGTAGGGGTAAGTGGAGGAATTTTCAATTTTTCCGTGCAATTCTTCTTCCCTGCACTCGCACACTCACCAACACATCATCGTGTCAAATACCAACGAAAGCAACTACTCACGCAGTTTCTTCTTCTTCTTCTTCTCCTGCGCTTCGTCTCAATCTCAAGCGTCAATTCTCCATCGCCAATCCTCTCTTTCTGCTGATTTCGGACTCGTCACTTACTTGGGTTTTGCATGTATATGCTGATGAAGGTGAAATGATGCTCTCAGCGGCAATAATTACTTTTGGACGCTGGACATAAGGCGTGATGGGCGGTTGCTGTTGTTGTTGTTGTTCTGCTAAGGAGACTGTGTTGAGCGCTCCACCTGCGTACTATTATTATCCAAGAGCATCAGAAGAGCATGTTCCTCTATCATCTCACCAGGGTGCTGCTTCTGCTTTCTCTGGGCGGCTCTTGGTTGATACTAATCTAGATACTTCATCTCCTGATACTTATAGACCTCCCCCTGCTCCTATCCCTTTCAATGTTACCTTGGGTACCACTCAAACTCCACCTGCGGCTCAAGAAATTCGTAGTGACAAGAATAATACTTCCTTGCATTCTACAAATTCTAATGCAATTCAAGAACCAGTTGCTGGAGACAATCATGGGACCTCGGCTAAGTTGGAAGAGCTGAAGGAATCAGACTGCAAAGTTCAAACCGATCTAGAGCTAGATTCTGCAAAGGGTTCCGAAATTGAACTTGCAAAGTCGGGAAAACCTATAGATGTAGTAGAAGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTCGCAACAAAATGTGACCATCATTTTCACCTTGCGTGCATTCTGGAATGGATGGAAAGAAGTGAGACTTGCCCTGTGTGCGATCAGGATTTGGTTTTCGACCCTCCCATTGAATAAGACATCAACGTGGGAGTTCAAATATACTGCGTAGTGTTTGAGAAGCAAGGTTACAAAGTCATGAGTTTGATATGATAGCAACCCGAGCTTATGGCTGTATTTTGATTGTTTCGTTTTCCGAGTTTTCTGGGTTTATTCCATTTTTTACTCAGTCCCCTGCGTTGCAGCATACAGGAAATTAAAGGAAATATTCTCTGTTTATAGTTTTATCAATTAGAATGTTTTAAAGTGATAGCTGGATACTACAAGCGAAAACAGCTGGCGATATGATTTTTCGAATAGATTGTAAGACTTTTGTTACATTGTCAAAGAATGGTAGGATGTTCTCACTCTGGTGGTACTGCTTTCATCTTATATATATGTATAGGGTGGGAATAGGAGCAATTCTTGTTTGAGTTATTACTTTCAATAACTTTTTTGTATATATTAAATTTCAATAATCTAGTAGTTGCATATTTTGATATTATCTCTATTTCATGCACACCAAAATTGAGATAAATTGAAC

>Glyma08g01960.6   sequence type=transcript   gene model=Glyma08g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGAGGGAGAGTAGTAGAGAAGAAGCGGTGGATGTTCCCTCTTTCTCCGTGATGTCATAGAATGGCGTATCCTCGTTATTATCTAGTTATTTATTTATTTGATGTTTATCATTAAAGAACCCCGGACCCGGATCAAAGAAAATTTAGTTAACTGAAGTGAACGGTTGAGATGTGGGGAAGAATGACGAAAGCGAATCAAGTAGGGGTAAGTGGAGGAATTTTCAATTTTTCCGTGCAATTCTTCTTCCCTGCACTCGCACACTCACCAACACATCATCGTGTCAAATACCAACGAAAGCAACTACTCACGCAGTTTCTTCTTCTTCTTCTTCTCCTGCGCTTCGTCTCAATCTCAAGCGTCAATTCTCCATCGCCAATCCTCTCTTTCTGCTGATTTCGGACTCGTCACTTACTTCGGCAATAATTACTTTTGGACGCTGGACATAAGGCGTGATGGGCGGTTGCTGTTGTTGTTGTTGTTCTGCTAAGGAGACTGTGTTGAGCGCTCCACCTGCGTACTATTATTATCCAAGAGCATCAGAAGAGCATGTTCCTCTATCATCTCACCAGGGTGCTGCTTCTGCTTTCTCTGGGCGGCTCTTGGTTGATACTAATCTAGATACTTCATCTCCTGATACTTATAGACCTCCCCCTGCTCCTATCCCTTTCAATGTTACCTTGGGTACCACTCAAACTCCACCTGCGGCTCAAGAAATTCGTAGTGACAAGAATAATACTTCCTTGCATTCTACAAATTCTAATGCAATTCAAGAACCAGTTGCTGGAGACAATCATGGGACCTCGGCTAAGTTGGAAGAGCTGAAGGAATCAGACTGCAAAGTTCAAACCGATCTAGAGCTAGATTCTGCAAAGGGTTCCGAAATTGAACTTGCAAAGTCGGGAAAACCTATAGATGTAGTAGAAGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTCGCAACAAAATGTGACCATCATTTTCACCTTGCGTGCATTCTGGAATGGATGGAAAGAAGTGAGACTTGCCCTGTGTGCGATCAGGATTTGGTTTTCGACCCTCCCATTGAATAAGACATCAACGTGGGAGTTCAAATATACTGCGTAGTGTTTGAGAAGCAAGGTTACAAAGTCATGAGTTTGATATGATAGCAACCCGAGCTTATGGCTGTATTTTGATTGTTTCGTTTTCCGAGTTTTCTGGGTTTATTCCATTTTTTACTCAGTCCCCTGCGTTGCAGCATACAGGAAATTAAAGGAAATATTCTCTGTTTATAGTTTTATCAATTAGAATGTTTTAAAGTGATAGCTGGATACTACAAGCGAAAACAGCTGGCGATATGATTTTTCGAATAGATTGTAAGACTTTTGTTACATTGTCAAAGAATGGTAGGATGTTCTCACTCTGGTGGTACTGCTTTCATCTTATATATATGTATAGGGTGGGAATAGGAGCAATTCTTGTTTGAGTTATTACTTTCAATAACTTTTTTGTATATATTAAATTTCAATAATCTAGTAGTTGCATATTTTGATATTATCTCTATTTCATGCACACCAAAATTGAGATAAATTGAAC

Coding sequences of Glyma08g01960

Limit To All Plant Sequences

>Glyma08g01960.1   sequence type=CDS   gene model=Glyma08g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGGTTGCTGTTGTTGTTGTTGTTCTGCTAAGGAGACTGTGTTGAGCGCTCCACCTGCGTACTATTATCAGTATCCAAGAGCATCAGAAGAGCATGTTCCTCTATCATCTCACCAGGGTGCTGCTTCTGCTTTCTCTGGGCGGCTCTTGGTTGATACTAATCTAGATACTTCATCTCCTGATACTTATAGACCTCCCCCTGCTCCTATCCCTTTCAATGTTACCTTGGGTACCACTCAAACTCCACCTGCGGCTCAAGAAATTCGTAGTGACAAGAATAATACTTCCTTGCATTCTACAAATTCTAATGCAATTCAAGAACCAGTTGCTGGAGACAATCATGGGACCTCGGCTAAGTTGGAAGAGCTGAAGGAATCAGACTGCAAAGTTCAAACCGATCTAGAGCTAGATTCTGCAAAGGGTTCCGAAATTGAACTTGCAAAGTCGGGAAAACCTATAGATGTAGTAGAAGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTCGCAACAAAATGTGACCATCATTTTCACCTTGCGTGCATTCTGGAATGGATGGAAAGAAGTGAGACTTGCCCTGTGTGCGATCAGGATTTGGTTTTCGACCCTCCCATTGAATAA

>Glyma08g01960.5   sequence type=CDS   gene model=Glyma08g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGGTTGCTGTTGTTGTTGTTGTTCTGCTAAGGAGACTGTGTTGAGCGCTCCACCTGCGTACTATTATTATCCAAGAGCATCAGAAGAGCATGTTCCTCTATCATCTCACCAGGGTGCTGCTTCTGCTTTCTCTGGGCGGCTCTTGGTTGATACTAATCTAGATACTTCATCTCCTGATACTTATAGACCTCCCCCTGCTCCTATCCCTTTCAATGTTACCTTGGGTACCACTCAAACTCCACCTGCGGCTCAAGAAATTCGTAGTGACAAGAATAATACTTCCTTGCATTCTACAAATTCTAATGCAATTCAAGAACCAGTTGCTGGAGACAATCATGGGACCTCGGCTAAGTTGGAAGAGCTGAAGGAATCAGACTGCAAAGTTCAAACCGATCTAGAGCTAGATTCTGCAAAGGGTTCCGAAATTGAACTTGCAAAGTCGGGAAAACCTATAGATGTAGTAGAAGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTCGCAACAAAATGTGACCATCATTTTCACCTTGCGTGCATTCTGGAATGGATGGAAAGAAGTGAGACTTGCCCTGTGTGCGATCAGGATTTGGTTTTCGACCCTCCCATTGAATAA

>Glyma08g01960.6   sequence type=CDS   gene model=Glyma08g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGGTTGCTGTTGTTGTTGTTGTTCTGCTAAGGAGACTGTGTTGAGCGCTCCACCTGCGTACTATTATTATCCAAGAGCATCAGAAGAGCATGTTCCTCTATCATCTCACCAGGGTGCTGCTTCTGCTTTCTCTGGGCGGCTCTTGGTTGATACTAATCTAGATACTTCATCTCCTGATACTTATAGACCTCCCCCTGCTCCTATCCCTTTCAATGTTACCTTGGGTACCACTCAAACTCCACCTGCGGCTCAAGAAATTCGTAGTGACAAGAATAATACTTCCTTGCATTCTACAAATTCTAATGCAATTCAAGAACCAGTTGCTGGAGACAATCATGGGACCTCGGCTAAGTTGGAAGAGCTGAAGGAATCAGACTGCAAAGTTCAAACCGATCTAGAGCTAGATTCTGCAAAGGGTTCCGAAATTGAACTTGCAAAGTCGGGAAAACCTATAGATGTAGTAGAAGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTCGCAACAAAATGTGACCATCATTTTCACCTTGCGTGCATTCTGGAATGGATGGAAAGAAGTGAGACTTGCCCTGTGTGCGATCAGGATTTGGTTTTCGACCCTCCCATTGAATAA

Predicted protein sequences of Glyma08g01960

Limit To All Plant Sequences

>Glyma08g01960.1   sequence type=predicted peptide   gene model=Glyma08g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGCCCCCCSAKETVLSAPPAYYYQYPRASEEHVPLSSHQGAASAFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTLGTTQTPPAAQEIRSDKNNTSLHSTNSNAIQEPVAGDNHGTSAKLEELKESDCKVQTDLELDSAKGSEIELAKSGKPIDVVEEEDTCPICLEEYDAENPKLATKCDHHFHLACILEWMERSETCPVCDQDLVFDPPIE*

>Glyma08g01960.5   sequence type=predicted peptide   gene model=Glyma08g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGCCCCCCSAKETVLSAPPAYYYYPRASEEHVPLSSHQGAASAFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTLGTTQTPPAAQEIRSDKNNTSLHSTNSNAIQEPVAGDNHGTSAKLEELKESDCKVQTDLELDSAKGSEIELAKSGKPIDVVEEEDTCPICLEEYDAENPKLATKCDHHFHLACILEWMERSETCPVCDQDLVFDPPIE*

>Glyma08g01960.6   sequence type=predicted peptide   gene model=Glyma08g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGCCCCCCSAKETVLSAPPAYYYYPRASEEHVPLSSHQGAASAFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTLGTTQTPPAAQEIRSDKNNTSLHSTNSNAIQEPVAGDNHGTSAKLEELKESDCKVQTDLELDSAKGSEIELAKSGKPIDVVEEEDTCPICLEEYDAENPKLATKCDHHFHLACILEWMERSETCPVCDQDLVFDPPIE*

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