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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G63800 | AT | Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 5 | chr1:23667888-23669003 REVERSE LENGTH=185 | SoyBase | E_val: 4.00E-105 | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0016881 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity | SoyBase | N/A | ISS |
| KOG0416 | KOG | Ubiquitin-protein ligase | JGI | ISS | |
| PTHR24067 | Panther | UBIQUITIN-CONJUGATING ENZYME E2 | JGI | ISS | |
| PTHR24067:SF19 | Panther | JGI | ISS | ||
| PF00179 | PFAM | Ubiquitin-conjugating enzyme | JGI | ISS | |
| UniRef100_C6T5B4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6T5B4_SOYBN | SoyBase | E_val: 2.00E-131 | ISS |
| UniRef100_Q9SPB9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carrier protein 4 n=2 Tax=Glycine max RepID=Q9SPB9_SOYBN | SoyBase | E_val: 3.00E-112 | ISS |
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Glyma08g01940 not represented in the dataset |
Glyma08g01940 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g37650 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g016100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g01940.4 sequence type=transcript gene model=Glyma08g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGTTTGAGTCAATTTTTTTTCTTTTACTTCCTCTCCAATCAAAAAATATTTCATTTGTTTTTTCTATTTTATTTTCTTCCATTTTCTCTTCTAGGTTTAAAAAACTTACTGCTTTTTCCTTTGACACTGAGGTTTGGATCTTTGCCTGTTTGGGTTTGTGGACTGCCAAATAAGCGTTTGTATATATTATTCTCACGGAGTTTGTGTGTGAGGCAGCAGCACACGGCACACACAAAGAACAAAAGACAAAGACAGAGAGAAACAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCTGTCTGTGATCTTTTCCGAATTTTTTTTTTGTATTTTCGATTTCAGAAAGTGTTCTTTTGCATAAATTGTTGTCTTTTTCCATTTGGGGTGCGTTGGATTGACATGGATCAGGTCATCAGGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACAGTCCTTATCAAGGTGGTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATGTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTTTGACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCAATGCATCAGATCCATTAAATGGTGATGCTGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAGAATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGGAAAGTTCCAGTGATGATGAGCCGAGTGAAGATGATTATGCCTCTAGTGATGATGCCATTGTTGGCCAACCTGATCCTTAGATTTTTACATACAATGCCTGCCTTATTTGCAGTCTTGCTTGTACATGATATCATTTAATTTGATATTGAGTCCAGGAATTTGAAGTGAGACAAGTTCTTAAGGTTGAAGGAAAAATTCACACCTTTCTATCTATTACATGGTGGTTGTGTAAATTGGTTTATGATTTAGATGCTTATGTGACTAGAAAATTCAATTTCTGAAGGTTCAAGCTGGTTTGGCATATGAATGCATTTATTGCTTCTAGTAAACTTGTGCGTGCCCTCTCACCAGGATGAAATTGACCCTTTTCCCCTTTCTTGTTTCTA >Glyma08g01940.5 sequence type=transcript gene model=Glyma08g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGTTTGAGTCAATTTTTTTTCTTTTACTTCCTCTCCAATCAAAAAATATTTCATTTGTTTTTTCTATTTTATTTTCTTCCATTTTCTCTTCTAGGTTTAAAAAACTTACTGCTTTTTCCTTTGACACTGAGGTTTGGATCTTTGCCTGTTTGGGTTTGTGGACTGCCAAATAAGCGTTTGTATATATTATTCTCACGGAGTTTGTGTGTGAGGCAGCAGCACACGGCACACACAAAGAACAAAAGACAAAGACAGAGAGAAACAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCTGTCATCAGGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACAGTCCTTATCAAGGTGGTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATGTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTTTGACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCAATGCATCAGATCCATTAAATGGTGATGCTGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAGAATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGGAAAGTTCCAGTGATGATGAGCCGAGTGAAGATGATTATGCCTCTAGTGATGATGCCATTGTTGGCCAACCTGATCCTTAGATTTTTACATACAATGCCTGCCTTATTTGCAGTCTTGCTTGTACATGATATCATTTAATTTGATATTGAGTCCAGGAATTTGAAGTGAGACAAGTTCTTAAGGTTGAAGGAAAAATTCACACCTTTCTATCTATTACATGGTGGTTGTGTAAATTGGTTTATGATTTAGATGCTTATGTGACTAGAAAATTCAATTTCTGAAGGTTCAAGCTGGTTTGGCATATGAATGCATTTATTGCTTCTAGTAAACTTGTGCGTGCCCTCTCACCAGGATGAAATTGACCCTTTTCCCCTTTCTTGTTTCTA
>Glyma08g01940.1 sequence type=CDS gene model=Glyma08g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCTGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACAGTCCTTATCAAGGTGGTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATGTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTTTGACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCAATGCATCAGATCCATTAAATGGTGATGCTGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAGAATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGGAAAGTTCCAGTGATGATGAGCCGAGTGAAGATGATTATGCCTCTAGTGATGATGCCATTGTTGGCCAACCTGATCCTTAG >Glyma08g01940.4 sequence type=CDS gene model=Glyma08g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCAGGTCATCAGGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACAGTCCTTATCAAGGTGGTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATGTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTTTGACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCAATGCATCAGATCCATTAAATGGTGATGCTGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAGAATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGGAAAGTTCCAGTGATGATGAGCCGAGTGAAGATGATTATGCCTCTAGTGATGATGCCATTGTTGGCCAACCTGATCCTTAG >Glyma08g01940.5 sequence type=CDS gene model=Glyma08g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACAGTCCTTATCAAGGTGGTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATGTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTTTGACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCAATGCATCAGATCCATTAAATGGTGATGCTGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAGAATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGGAAAGTTCCAGTGATGATGAGCCGAGTGAAGATGATTATGCCTCTAGTGATGATGCCATTGTTGGCCAACCTGATCCTTAG
>Glyma08g01940.1 sequence type=predicted peptide gene model=Glyma08g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSPSKRRDMDLMKLMMSDYKVETVNDGMQEFFVEFHGPKDSPYQGGVWKVRVDLPDAYPYKSPSIGFVNKIFHPNVDEMSGSVCLDVISQTWSPMFDLVNVFEVFLPQLLLYPNASDPLNGDAAALMIRDHATYEQRVKEYCEKYAKPEDVGAVQEESSSDDEPSEDDYASSDDAIVGQPDP* >Glyma08g01940.4 sequence type=predicted peptide gene model=Glyma08g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDQVIRMMSDYKVETVNDGMQEFFVEFHGPKDSPYQGGVWKVRVDLPDAYPYKSPSIGFVNKIFHPNVDEMSGSVCLDVISQTWSPMFDLVNVFEVFLPQLLLYPNASDPLNGDAAALMIRDHATYEQRVKEYCEKYAKPEDVGAVQEESSSDDEPSEDDYASSDDAIVGQPDP* >Glyma08g01940.5 sequence type=predicted peptide gene model=Glyma08g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMSDYKVETVNDGMQEFFVEFHGPKDSPYQGGVWKVRVDLPDAYPYKSPSIGFVNKIFHPNVDEMSGSVCLDVISQTWSPMFDLVNVFEVFLPQLLLYPNASDPLNGDAAALMIRDHATYEQRVKEYCEKYAKPEDVGAVQEESSSDDEPSEDDYASSDDAIVGQPDP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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