SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G63770 | AT | Annotation by Michelle Graham. TAIR10: Peptidase M1 family protein | chr1:23657791-23664243 REVERSE LENGTH=987 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0008237 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1046 | KOG | Puromycin-sensitive aminopeptidase and related aminopeptidases | JGI | ISS | |
| PTHR11533 | Panther | PROTEASE M1 ZINC METALLOPROTEASE | JGI | ISS | |
| PTHR11533:SF8 | Panther | gb def: zinc metalloprotease [caenorhabditis elegans] | JGI | ISS | |
| PF01433 | PFAM | Peptidase family M1 | JGI | ISS | |
| PF11940 | PFAM | Domain of unknown function (DUF3458) | JGI | ISS | |
| UniRef100_F4I3R0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peptidase M1 family protein n=2 Tax=Arabidopsis thaliana RepID=F4I3R0_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233983C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233983C related cluster n=1 Tax=unknown RepID=UPI000233983C | SoyBase | E_val: 0 | ISS |
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Glyma08g01921 not represented in the dataset |
Glyma08g01921 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g37670 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g015900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g01921.1 sequence type=CDS gene model=Glyma08g01921 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGTCTTGTGAATGTAATAAACTGTTGACGTGGCTTTTACAGGTCAATTTCCGAAAGAAGTATTGCCCATTATATTCTTCACTATCAAGGGTCAAGCAAGTAAGTAGGAGACTACTTTGTTCAGTTGCCACAGAGGATTCACCAAAGCAAGTTGAAGAATCCAAAATGGAGACACCAAGGGAAATATTCTTAAAGGATTACAAGATGCCTGATTACTACTTTGACACTGTAGATCTGAAATTTACCTTGGGAGAGGAGAAGACCATAGTTAGTTCTAAAATTGCTGTGTATCCTCGCATTGAAGGTTCTACTCCCCCACTAGTTTTAGATGGACAGGACTTATCTTTAGTTTCAATTCACCTGAATGGCAAGGCTTTGAAGGAGGAAGATTATCATTTGGATGCACGCCATCTCACAATCCAATCACCTCCTAGTGGTAAATATGATCTTGAAATTGTTACAGATATTTGTCCACAGAAAAACACATCATTAGAGGGACTTTACAAATCATCTGGGAATTTCTGTACTCAATGTGAGGCTGAAGGCTTCCGTAAAATTACATTTTTTCAGGATCGACCTGATATAATGGCAAAATATACAGTTCGCATCGAGGCAGATAAATCACTGTATCCAGTGTTATTGTCTAATGGAAACCTAGCTGAACAAGGTGACTTAGAGGATGGCAGGCATTATGCTGTTTGGGAGGACCCCTTCAAGAAACCTTCTTATCTGTTTGCCTTGGTTGCCGGGCAATTGCAGAGCAGAGATGACACATTTGTTACCCGTTCAGGGAGGAAGGTGTCCCTTAGGATATGGACACCTGCAGATGATGTACCTAAGACTGCACATGCTATGTATTCTCTGAAAGCAGCTATGAAGTGGGATGAAGATGTTTTTGGACTTGAATATGACCTGGATCTCTTCAATGTTGTTGCTGTCCCAGATTTTAACATGGGAGCCATGGAAAACAAGAGCTTGAATATTTTCAATTCAAAGCTTGTATTGGCCTCTCCAGAAACTGCTACTGATGCAGACTATGCTGCAATATTGGGAGTTATTGGCCATGAGTATTTCCACAACTGGACTGGCAACAGAGTGACATGTCGCGACTGGTTCCAGCTTAGCCTGAAGGAAGGTCTCACTGTTTTTCGTGATCAGGAATTTTCATCTGACATGGGAAGTTGTACTGTAAAGCGGATTGCTGATGTTTCAAAACTTAGAAATTACCAGTTTCCACAGGATGCAGGTCCTATGGCCCATCCAGTGCGACCACACTCTTACATCAAGGGGGCTGAAGTTGTGAGAATGTACAAAACCTTGCTAGGAAGTCAAGGGTTCCGAAAAGGCATGGATCTTTATTTTAAGAGACATGATGGCCAAGCTGTAACATGTGAAGATTTTTTTGCCGCCATGCGAGATGCAAATGATGCAGATTTTGCAAATTTCTTGCTATGGTATTCTCAAGCTGGGACCCCTGTTGTCATAGTAAATACTTCTTATAATCCAGAAGCACATACTTTTTCTTTAAAATTTAGTCAAGATATACCACCAACCCCAGGGCAATCAGTTAAGGAACCCACATTCATTCCTGTTGCAGTGGGTTTGCTTGATTCCATGGGAAAGGACATTCCTCTTTCAACTGTTTACCATAATGGTACTATGCAATCTGTTTCAAGCAATGATCAATCAGTCTGCACTACAGTCCTTAGAGTGACCAAGAAAGAGGAAGAGTTTGTATTCACCGATATATTTGAAAGGCCTGTTCCTTCTTTGTTAAGAGGATACAGTGCTCCTATTCGTCTGGAATCTGATCTCACTGATAGCGACCTGTTTTTCTTACTAGCCAATGATTCCGATGAATTCAACCGTTGGGAGGCTGGACAAGTTTTGGCACGGAAGTTGATGCTTAACTTAGTGGATGATTTGCAACGTAACAAACCATTGGTTTTAAATTCCAATTTTGTTCAAGGGTTCAAACGTATTTTATGTGACTCAAGTCTGGACAAAGAGTTTGTGGCAAAGGCAATAACTTTGCCTGGTGAGGGAGAAATAATGGATATGATGGGGGTTGCAGATCCTGATGCTGTTCATACTGTTCGGACTTTCATCAGGAAGCAGCTTGCAACTGTGGAAAATAACAGGAGCTCAGAAGAATATGTCTTCAATCACTCAAACTTGGCCAGGCGTGCTCTGAAGAATGTTGCTCTTGCTTATCTTGGATGCCTTGAGGAAAAAGAATTCACCGATCTTGTGTTGCATGAGTATAAAACTGCTACAAATATGACTGAGCAGTTTGCTGCCTTGGCTGCCATAGCTCAGAACCCTGGTAAAACCCGTGATGATGTTCTTGATGACTTTTATGGCAAGTGGCAGCATGATTTCTTGGTGGTGAACAAATGGTTTGCTCTTCAAGCAATGTCTGACATTCCTGGTAATGTTGAGAATGTGCGGAAACTGTTAAGCCACCCAGCATTTGATCTGCGCAATCCCAACAAAGTGTACTCTCTCATTGGAGGTTTCTGTGGGTCTCCGGTGAACTTTCATGCAAAGGATGGGTCAGGCTACAAGTTTTTGGGAGAGATTGTGCTGCAACTTGACAAGCTAAATCCTCAGGTAGCCTCGAGAATGGTGTCAGCCTTCTCAAGATGGAGGCGTTATGATGAAGACAGACAAAAGCTTGCAAAGGCGCAGTTGGAGAGGATCATGTCTACTAATGGACTATCGGAGAATGTGTTTGAGATAGCTTCGAAAAGCTTAGCTGCCTAA
>Glyma08g01921.1 sequence type=predicted peptide gene model=Glyma08g01921 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSCECNKLLTWLLQVNFRKKYCPLYSSLSRVKQVSRRLLCSVATEDSPKQVEESKMETPREIFLKDYKMPDYYFDTVDLKFTLGEEKTIVSSKIAVYPRIEGSTPPLVLDGQDLSLVSIHLNGKALKEEDYHLDARHLTIQSPPSGKYDLEIVTDICPQKNTSLEGLYKSSGNFCTQCEAEGFRKITFFQDRPDIMAKYTVRIEADKSLYPVLLSNGNLAEQGDLEDGRHYAVWEDPFKKPSYLFALVAGQLQSRDDTFVTRSGRKVSLRIWTPADDVPKTAHAMYSLKAAMKWDEDVFGLEYDLDLFNVVAVPDFNMGAMENKSLNIFNSKLVLASPETATDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSCTVKRIADVSKLRNYQFPQDAGPMAHPVRPHSYIKGAEVVRMYKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFFAAMRDANDADFANFLLWYSQAGTPVVIVNTSYNPEAHTFSLKFSQDIPPTPGQSVKEPTFIPVAVGLLDSMGKDIPLSTVYHNGTMQSVSSNDQSVCTTVLRVTKKEEEFVFTDIFERPVPSLLRGYSAPIRLESDLTDSDLFFLLANDSDEFNRWEAGQVLARKLMLNLVDDLQRNKPLVLNSNFVQGFKRILCDSSLDKEFVAKAITLPGEGEIMDMMGVADPDAVHTVRTFIRKQLATVENNRSSEEYVFNHSNLARRALKNVALAYLGCLEEKEFTDLVLHEYKTATNMTEQFAALAAIAQNPGKTRDDVLDDFYGKWQHDFLVVNKWFALQAMSDIPGNVENVRKLLSHPAFDLRNPNKVYSLIGGFCGSPVNFHAKDGSGYKFLGEIVLQLDKLNPQVASRMVSAFSRWRRYDEDRQKLAKAQLERIMSTNGLSENVFEIASKSLAA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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