SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G41330 | AT | Annotation by Michelle Graham. TAIR10: BTB/POZ domain with WD40/YVTN repeat-like protein | chr5:16536452-16537828 REVERSE LENGTH=458 | SoyBase | E_val: 0 | ISS |
| GO:0006813 | GO-bp | Annotation by Michelle Graham. GO Biological Process: potassium ion transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008076 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: voltage-gated potassium channel complex | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005249 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: voltage-gated potassium channel activity | SoyBase | N/A | ISS |
| KOG2714 | KOG | SETA binding protein SB1 and related proteins, contain BTB/POZ domain | JGI | ISS | |
| PTHR14499 | Panther | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING | JGI | ISS | |
| PTHR14499:SF11 | Panther | POTASSIUM CHANNEL TETRAMERISATION DOMAIN-CONTAININ | JGI | ISS | |
| PF02214 | PFAM | K+ channel tetramerisation domain | JGI | ISS | |
| UniRef100_B9RCD7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Potassium channel tetramerization domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RCD7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KPC1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KPC1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g01900 not represented in the dataset |
Glyma08g01900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g37690 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g015700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g01900.1 sequence type=CDS gene model=Glyma08g01900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCACCTTTTGCCGGCTCCGAACCAGTTGGGTTCCCGAAGCCAGATTCCAACATAGTTTCCATTGACGTGGGAGGCCAACTGTTCCAAACCACGAAACAGACACTAACCTCGGCGGGTCCGAAAACCTTCTTCTCCAGAATTGCGGCGGAATCTTCTGGACTCCACACCCCCTTCGTAGACAGAGACCCAGAACTCTTCTCGCTCCTTCTCTCTCTTCTCAGAACCGGTAACCTTCCCTCAAAGGCCAAAGCTTTCGATCTCCAAGACCTAATCATCGAGTCTAAATTCTACGGCATCGAGTCCCTCCTCGTCAATTCCCTTTCCAACCCTTCTCAATTGGAACCTTTTAATCTCCAAAAATCGCTTCTTTTACCCTTGAACGGACGCGATTCCCCCTCCGCCCTCGCCGCCACCGCTTCCGGCGCCCTCCACGTCGCGCACGGCAGCAAGATCACCTCCTTCGACTGGTCCCTCCGCCGCAAATCCACCGTCCTGACTCAATTTACCGCCGTGGATTCCCTCCTCGCCCTCTCGCCGGCCCTCGCCGCCGCCGGCGCCAACGACTTCTCCGGCCTCCAGATCCTCGACCTCGAGAAGGGGCGCGTCAGGGAAACCATAAATTGGGAAAACGTCACCAAATCCGGCTCCACCGTCCAAGCCATCGGATCCTCGCCGGAAAACATGTTCGTGAGCTTCGAATCTTCCCGCAGAAACTCGAATTCGATAATGGTTTACGATTTGCATACCCTAACACCCGTCACGGAGATCAGTCACAACGAGATCTTCGGCGCGAACATCGATTCGGCGATTCCGGCGACGAAGTTGCAATGGATTGAGGGATATAATTTGCTAATGGCTTCTGGATCCCACAGTGGGCCCTCGGGCGTGAACGGGAACATACGGTTGTGGGATGTTAGGTCCGGCAACGTTGTTTGGGAGGTTTCTGAGAAGGTAGATTGTTTTGCTGACGTGGCGGTTTGTGATTCGTTGTCGGTTATTTTTAAGGTTGGGGTGAATTCGGGGGAGGCATCCTACGTGGACTTGCGGAATTTGAGTAGCGGCGGTGAGAACGCGTGGGTTTGTCTCGGAGACAATAAAAGGAAAATTTTGAATGGGAAGAAGGAAGGGTTTGGTTGCAAGGTTGAAACGCAGGGGAATCAAGTGTTTTGCACCAAGGGTGGTGAAGTGGAGTTATGGTCGGAGGTTGTAATGGGGTCTGGGAACAGCAGTGGGAGGATCTTCAAGAAGAACTTGATGGGGAGAGTCAGGGATATGGGTGGGGCCAAGATTACCAATTTGGCCTTTGGAGGGAGCACCATGTTCTTGACTAGGAAGGATCAGCAATGTGTTGAGGTGTGGCAGAGTTCTTCTAGGGAATTTTGA
>Glyma08g01900.1 sequence type=predicted peptide gene model=Glyma08g01900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPPFAGSEPVGFPKPDSNIVSIDVGGQLFQTTKQTLTSAGPKTFFSRIAAESSGLHTPFVDRDPELFSLLLSLLRTGNLPSKAKAFDLQDLIIESKFYGIESLLVNSLSNPSQLEPFNLQKSLLLPLNGRDSPSALAATASGALHVAHGSKITSFDWSLRRKSTVLTQFTAVDSLLALSPALAAAGANDFSGLQILDLEKGRVRETINWENVTKSGSTVQAIGSSPENMFVSFESSRRNSNSIMVYDLHTLTPVTEISHNEIFGANIDSAIPATKLQWIEGYNLLMASGSHSGPSGVNGNIRLWDVRSGNVVWEVSEKVDCFADVAVCDSLSVIFKVGVNSGEASYVDLRNLSSGGENAWVCLGDNKRKILNGKKEGFGCKVETQGNQVFCTKGGEVELWSEVVMGSGNSSGRIFKKNLMGRVRDMGGAKITNLAFGGSTMFLTRKDQQCVEVWQSSSREF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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