Glyma08g01860 - SoyBase

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Report for Sequence Feature Glyma08g01860

Feature Type:	gene_model
Chromosome:	Gm08
Start:	1202256
stop:	1204133
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g01860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00430	AT	Annotation by Michelle Graham. TAIR10: plasma membrane intrinsic protein 1;4 \| chr4:186143-187531 REVERSE LENGTH=287	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015250	GO-mf	Annotation by Michelle Graham. GO Molecular Function: water channel activity	SoyBase	N/A	ISS
KOG0223	KOG	Aquaporin (major intrinsic protein family)	JGI		ISS
PTHR19139	Panther	AQUAPORIN TRANSPORTER	JGI		ISS
PTHR19139:SF55	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00230	PFAM	Major intrinsic protein	JGI		ISS
UniRef100_G7KC21	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aquaporin n=1 Tax=Medicago truncatula RepID=G7KC21_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00019D342C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00019D342C related cluster n=1 Tax=unknown RepID=UPI00019D342C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g01860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g01860

Paralog	Evidence	Comments
Glyma05g37730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g01860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g015300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g01860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g01860

Limit To All Plant Sequences

>Glyma08g01860.1   sequence type=CDS   gene model=Glyma08g01860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGTAAAGAGGAAGATGTTAACGTTGGAGCAAACAAGTTCTCAGAAAGGCAACCAATTGGTACAGCAGCTCAGGGTGGTGGTGACAAGGACTACAAGGAGGCACCCCCAGCTCCTTTGTTTGAACCTGGTGAGCTCAAATCATGGTCCTTCTACAGAGCTGGAATTGCTGAGTTTGTGGCAACTTTCTTGTTCCTCTACATTACCATCTTAACTGTCATGGGTGTCAACAGGTCACCCTCCAAGTGTGCCTCTGTTGGCATTCAAGGCATTGCTTGGGCCTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGGGGGACACATCAACCCAGCTGTGACCTTTGGTCTGTTTTTGGCAAGGAAGCTGTCCCTAACAAGGGCACTGTTCTACATTATCATGCAGTGTCTTGGAGCCATCTGCGGGGCTGGTGTGGTGAAGGGCTTTGAGGGCAATGCTAACTATGAGTTGTTCAAAGGAGGAGCCAATTTTGTGAATTCTGGATACACCAAAGGTGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCTACCATTCCCATCACAGGAACTGGCATTAACCCAGCTAGGAGTCTCGGAGCTGCCATCATCTACAACAGAGACCATGCATGGGATGACCAATGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCTGCTGTGTATCACCAGATAGTCATCCGAGCCATTCCTTTCAAGACAAGGGCTTAG

Predicted protein sequences of Glyma08g01860

Limit To All Plant Sequences

>Glyma08g01860.1   sequence type=predicted peptide   gene model=Glyma08g01860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESKEEDVNVGANKFSERQPIGTAAQGGGDKDYKEAPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVNRSPSKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAICGAGVVKGFEGNANYELFKGGANFVNSGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWDDQWIFWVGPFIGAALAAVYHQIVIRAIPFKTRA*

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