SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G63680 | AT | Annotation by Michelle Graham. TAIR10: acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases | chr1:23614461-23617247 FORWARD LENGTH=772 | SoyBase | E_val: 0 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006399 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process | SoyBase | N/A | ISS |
| GO:0008360 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell shape | SoyBase | N/A | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast fission | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0051301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell division | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009295 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleoid | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016874 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ligase activity | SoyBase | N/A | ISS |
| GO:0016881 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity | SoyBase | N/A | ISS |
| PTHR23135 | Panther | MUR LIGASE FAMILY MEMBER | JGI | ISS | |
| PTHR23135:SF4 | Panther | UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE) | JGI | ISS | |
| PF01225 | PFAM | Mur ligase family, catalytic domain | JGI | ISS | |
| PF02875 | PFAM | Mur ligase family, glutamate ligase domain | JGI | ISS | |
| PF08245 | PFAM | Mur ligase middle domain | JGI | ISS | |
| UniRef100_I1KPB4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: UDP-N-acetylmuramyl-tripeptide synthetase 2 n=1 Tax=Glycine max RepID=I1KPB4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KPB4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UDP-N-acetylmuramyl-tripeptide synthetase 2 n=1 Tax=Glycine max RepID=I1KPB4_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma08g01850 not represented in the dataset |
Glyma08g01850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g37740 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g015200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g01850.1 sequence type=CDS gene model=Glyma08g01850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTTATCATTTCTTGGTGTTCCGCACTTTGTGTCACCTGCAACTACATCATCCACTGTAAAGTTGCAACACTTTCGCAAACCTTGTACTTGTAGTTCTACACCCTTCTTCCGTCTCCTTTCATATCCCTTTCTTCACGTTCGGGCTCCGCGGGCCATTGGGCCCGATGGGAAGTTCTACCCAAGCCCAGCCGACGACGACCCACCGGAAGCTGACGAGGATTCCTCCCACGGCTTCTCCACCTTCCAGCAAATCCAGCGCCAAGCAGAACGCGCGCGCCAAATCGAAGAAGACGACTACAAGAAGAACCAATCCACGTACCTCGCCGCCATCGCCGACGTCGAAGACGCCCCCGACAACGCCCCCTTCGACTCCTCTGAGGATGACCTCTTTGGCGAAATCGACAAAGCCTTAGCTCTCAAGCGCAAAGAATTCGTCTCCCAAGGCCTTCTCCAACCCAATCCCCCCAAACAGGATCCACTCCCCGTCGCCGCTGTCGACGAGCTCCAACCAGACGAGCTCGGCGATTTGGCTGAAATCGAACGCCTCCAGGGACTCACCGCTGACGGTAACGGTAACATAAGCAACTCAACCGAATCTCCGTTTGAATTCGATTTTGACAGTTATGGTAAAACTAAGGTTAGGATTGTAGAAGGGAAGTTTAAGATGAGTTTGGCTGAGCTTCTAGACGAGAGTAAGGTCGTCCCGGTGTCGGTTTCCGGTGATTTGGAAATCGAAATTACCGGAATTCAGCACGATTCGAGGATTGTTAGTTCCGGTGACTTATTTGTGTGTTGTGTGGGGAGTAAAACCGATGGGCATTTGTTTTTGTCCGAGGCTGATAAGAGAGGCGCGGTTGCGGTTGTGGCTAGTAAAGAGATTGATATTGAGGATACTTTGGGGTGTAAGGCTTTGGTTATTGTGGAAGATACTAATGCTGTTCTTCCTGCGTTGGCTGCCTCGTTTTATAAACAGCCTTCTACGAAAATGGCTGTGATTGGGATAACCGGGACTTATGGCAAAACGACCACCACCTGCTTGATTAAAAGTTTGTATGAGTCGATGGGGCTGCGAACCGGGATGTTAAACTCGGTTGCTTCTTATGTCCATGGGGACAATAAGTTGGAGTTGGGTAATGCAGTGCCGGATGCTGTTTTGGTTCAGAATTTGATGGCCAAGATGATTCACAATGGAACTGAGGTGGTGGTCATGGAGGCGGGTGCTCATGGGTTGGGGGATGGGAAGTATGATGAGGTTGACTTTGATATTGCGGTCTTCACTAATTTGAGTCAGGAGGAGGAGGGAGATATAGATGCGCAGGCTAAGTTGTTCTCGAGAATGGTGGATCCGGAGAGGCATAGGAAGGTTGTTAACATTGATGATCCGAATGCACCCTTTTTTGTGTCGCAGGGGAACCGGGAAGTTCCTGTTGTGACATTTGCGATGGAGAATAAGGAGGCAGATGTTCATCCCTTGAAGTTTGAGCTTTCTTTGTTTGAGACGCAGGTGTTGGTTAATACTCCCACGGGGATACTGGAGATTTCGTCCGGTTTGCTTGGGAAGCATAATATTTACAACATCCTTGCTGCTGTGGCAGTTGGGATTGCTGTTGGGGCACCCTTGGAGGACATTGTTAGAGGGATTGAAGAGGTTGATGCGGTTCCTGGGAGGTGTGAGTTGATTGATGAGGAACAAGCATTTGGGGTGATAGTGGACTATGCCAGTACTCCTGATGCGTTGTCTAGATTGCTCGATTCTGTTAGAGAGCTTGGACCTCGCAGGGTTATAACTGTCATTGGATGCTGTGGTGAGGGCGACAGGGGGAAGAGGCCCGTGATGACCAAGATAGCAACAGATAAAAGTGAAGTGACCATGCTGACATCTGACAATCCCAAGAGTGAAGATCCATTGGACATATTGGATGATATGTTAGCTGGGGTAGGATGGACGATGCAGGACTACCTGAAATATGGAGAGAATGACTATTATCCACCTCTTCCAAATGGTCATAGACTTTTTCTCCATGACATTAGGAGGGTAGCTGTGCGAGCTGCAGTTGCAATGGGTGAGGAGGGCGATGTGGTTGTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAAAAGGAATTCTTTGATGATCGAGAAGAGTGCCGAGAGGCATTGCAGTATGTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCGGTTACCAGAGAGTCATTGA
>Glyma08g01850.1 sequence type=predicted peptide gene model=Glyma08g01850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALSFLGVPHFVSPATTSSTVKLQHFRKPCTCSSTPFFRLLSYPFLHVRAPRAIGPDGKFYPSPADDDPPEADEDSSHGFSTFQQIQRQAERARQIEEDDYKKNQSTYLAAIADVEDAPDNAPFDSSEDDLFGEIDKALALKRKEFVSQGLLQPNPPKQDPLPVAAVDELQPDELGDLAEIERLQGLTADGNGNISNSTESPFEFDFDSYGKTKVRIVEGKFKMSLAELLDESKVVPVSVSGDLEIEITGIQHDSRIVSSGDLFVCCVGSKTDGHLFLSEADKRGAVAVVASKEIDIEDTLGCKALVIVEDTNAVLPALAASFYKQPSTKMAVIGITGTYGKTTTTCLIKSLYESMGLRTGMLNSVASYVHGDNKLELGNAVPDAVLVQNLMAKMIHNGTEVVVMEAGAHGLGDGKYDEVDFDIAVFTNLSQEEEGDIDAQAKLFSRMVDPERHRKVVNIDDPNAPFFVSQGNREVPVVTFAMENKEADVHPLKFELSLFETQVLVNTPTGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYASTPDALSRLLDSVRELGPRRVITVIGCCGEGDRGKRPVMTKIATDKSEVTMLTSDNPKSEDPLDILDDMLAGVGWTMQDYLKYGENDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDVVVVAGKGHETYQVEGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
