Glyma08g01820 - SoyBase

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Report for Sequence Feature Glyma08g01820

Feature Type:	gene_model
Chromosome:	Gm08
Start:	1178728
stop:	1182137
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g01820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G63660	AT	Annotation by Michelle Graham. TAIR10: GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative \| chr1:23604127-23607080 REVERSE LENGTH=534	SoyBase	E_val: 0	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006164	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0006177	GO-bp	Annotation by Michelle Graham. GO Biological Process: GMP biosynthetic process	SoyBase	N/A	ISS
GO:0006529	GO-bp	Annotation by Michelle Graham. GO Biological Process: asparagine biosynthetic process	SoyBase	N/A	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0009113	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleobase biosynthetic process	SoyBase	N/A	ISS
GO:0009117	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003922	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GMP synthase (glutamine-hydrolyzing) activity	SoyBase	N/A	ISS
GO:0004066	GO-mf	Annotation by Michelle Graham. GO Molecular Function: asparagine synthase (glutamine-hydrolyzing) activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG1622	KOG	GMP synthase	JGI		ISS
PTHR11922	Panther	GMP SYNTHASE-RELATED	JGI		ISS
PTHR11922:SF2	Panther	GMP SYNTHASE	JGI		ISS
PF00117	PFAM	Glutamine amidotransferase class-I	JGI		ISS
PF00733	PFAM	Asparagine synthase	JGI		ISS
PF00958	PFAM	GMP synthase C terminal domain	JGI		ISS
UniRef100_B9SBB6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GMP synthase, putative n=1 Tax=Ricinus communis RepID=B9SBB6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KPB0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KPB0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g01820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g01820 not represented in the dataset	Glyma08g01820 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g01820

Paralog	Evidence	Comments
Glyma05g37760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g01820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g015000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g01820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g01820

Limit To All Plant Sequences

>Glyma08g01820.2   sequence type=transcript   gene model=Glyma08g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTAGTTCAATATTGTTCAAAATTACTGTTGCGGGTCATAAACCCTGACCTATATCTATCAGCACTGTCAACACCATAAACCCTAGCACTTGGCACTCACTCATGGACCCCAAAAACGTGAAATCGGACCTGGTTCTCATTCTCGATTACGGTTCCCAATACACCCACCTCATCACTCGCCGCATCCGCAGCCTCTCGGTGTTCTCCCTATGCATCTCCGGCACCTCCTCTCTTTCAACCATCACCGACCTCAACCCCTCCGTCGTCATTCTCTCCGGGGGCCCCCACTCCGTCCACACCCCGGACTCCCCCTCCTTCCCCGACGGCTTCCTCCAGTGGGCCCATTCCAATGGCGTCACCGTCCTCGGCATCTGCTACGGCCTCCAGCTCCTCGTTCAGCGCCTCGGCGGCGACGTCCGCGTCGGAGACAAGCAGGAGTATGGCCGCATGGAAATCTGCGCTGACAAACCCTCCGCGCTCTTCGGCCCCGAGAAAGTCGGTAAACGACAGGTCGTCTGGATGAGCCACGGCGACGAGGCCGTCACGCTACCCGATGGATTCCATGTCGTCGCCCGCAGCGACCAGGGCGCCGTCGCCGCCATTGAAAACCCCTCCGCCAAGCTCTACGGCCTCCAGTATCACCCTGAGGTGACGCATTCGGAGGAAGGAATGGAGACACTGCAGCGTTTTCTGTTTGATGTTTGTGGTGTGGGAGCAGGGTGGAAGATGGAGGATGTGATGGAGGAGGAGATAAAGGTGATTAAAGAAACGGTGGGGCCTGATGAGCATGTGATTTGTGCTTTGTCTGGTGGTGTGGATTCCACTGTTGCTGCTACTCTCGTGCATAAGGCTATTGGGGATAGGCTTCATTGTGTGTTTGTGGATAATGGGTTGCTTAGGTATAAGGAGAGGGAGCGGGTGATGGAGACTTTTGAGAAGGATCTTCATTTGCCGGTTGTGTGTGTTGATGCCGTGGGTCAGTTTCTTACCAAGTTGAAAGGTGTCGTGGATCCAGAGACTAAGAGGAAGATTATTGGGAAGGAGTTTATTTGTATTTTTGATGCTTTTGCTCAGGAGCTTGAGGGGAAGCTGGGGAAGAAGCCTTCTTATTTGGTTCAGGGGACGTTGTATCCTGATGTGATTGAATCTTGTCCTCCACCTGGGACCGGGAGAACCCATTCCCATACCATTAAGAGTCATCATAATGTTGGAGGCCTTCCAAAAGATATGAAGTTGAAGCTTATTGAACCACTTAAGCTTCTGTTCAAGGATGAGGTTCGTCAATTAGGGAGGATCTTGGATGTTCCTGTGGCCTTTCTAAAACGTCACCCATTCCCAGGGCCTGGTCTTGCAGTGAGAGTCCTGGGTGATGTGACTGAAGGAAATGCTTTAGATATTCTCCGACTGGTTGATGAAATTTTCATTCAGTCAATCAAGGATGCTGGGCTCTATGATTCAATATGGCAAGCTTTTGCAGTTTTCTTGCCTGTTCGATCGGTTGGAGTTCAAGGTGATCAAAGAACACACTCCCATGTTGTTGCTCTCAGAGCTGTTACAAGTCAAGATGGAATGACTGCTGACTGGTAAGATTTCAACTGTAGTATGTTTGGTTATGCTACCTAATAATGTTTTTCATTTTTTCCTTATTACTGCTGAATGTGCTCCATTTGCAGAATATAATTGTGAAAATCATATTTGGTTATGTTGTGCTGCTGCTGCTGCTGCATTACCATATTTTGTTTTCT

Coding sequences of Glyma08g01820

Limit To All Plant Sequences

>Glyma08g01820.1   sequence type=CDS   gene model=Glyma08g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCCCAAAAACGTGAAATCGGACCTGGTTCTCATTCTCGATTACGGTTCCCAATACACCCACCTCATCACTCGCCGCATCCGCAGCCTCTCGGTGTTCTCCCTATGCATCTCCGGCACCTCCTCTCTTTCAACCATCACCGACCTCAACCCCTCCGTCGTCATTCTCTCCGGGGGCCCCCACTCCGTCCACACCCCGGACTCCCCCTCCTTCCCCGACGGCTTCCTCCAGTGGGCCCATTCCAATGGCGTCACCGTCCTCGGCATCTGCTACGGCCTCCAGCTCCTCGTTCAGCGCCTCGGCGGCGACGTCCGCGTCGGAGACAAGCAGGAGTATGGCCGCATGGAAATCTGCGCTGACAAACCCTCCGCGCTCTTCGGCCCCGAGAAAGTCGGTAAACGACAGGTCGTCTGGATGAGCCACGGCGACGAGGCCGTCACGCTACCCGATGGATTCCATGTCGTCGCCCGCAGCGACCAGGGCGCCGTCGCCGCCATTGAAAACCCCTCCGCCAAGCTCTACGGCCTCCAGTATCACCCTGAGGTGACGCATTCGGAGGAAGGAATGGAGACACTGCAGCGTTTTCTGTTTGATGTTTGTGGTGTGGGAGCAGGGTGGAAGATGGAGGATGTGATGGAGGAGGAGATAAAGGTGATTAAAGAAACGGTGGGGCCTGATGAGCATGTGATTTGTGCTTTGTCTGGTGGTGTGGATTCCACTGTTGCTGCTACTCTCGTGCATAAGGCTATTGGGGATAGGCTTCATTGTGTGTTTGTGGATAATGGGTTGCTTAGGTATAAGGAGAGGGAGCGGGTGATGGAGACTTTTGAGAAGGATCTTCATTTGCCGGTTGTGTGTGTTGATGCCGTGGGTCAGTTTCTTACCAAGTTGAAAGGTGTCGTGGATCCAGAGACTAAGAGGAAGATTATTGGGAAGGAGTTTATTTGTATTTTTGATGCTTTTGCTCAGGAGCTTGAGGGGAAGCTGGGGAAGAAGCCTTCTTATTTGGTTCAGGGGACGTTGTATCCTGATGTGATTGAATCTTGTCCTCCACCTGGGACCGGGAGAACCCATTCCCATACCATTAAGAGTCATCATAATGTTGGAGGCCTTCCAAAAGATATGAAGTTGAAGCTTATTGAACCACTTAAGCTTCTGTTCAAGGATGAGGTTCGTCAATTAGGGAGGATCTTGGATGTTCCTGTGGCCTTTCTAAAACGTCACCCATTCCCAGGGCCTGGTCTTGCAGTGAGAGTCCTGGGTGATGTGACTGAAGGAAATGCTTTAGATATTCTCCGACTGGTTGATGAAATTTTCATTCAGTCAATCAAGGATGCTGGGCTCTATGATTCAATATGGCAAGCTTTTGCAGTTTTCTTGCCTGTTCGATCGGTTGGAGTTCAAGGTGATCAAAGAACACACTCCCATGTTGTTGCTCTCAGAGCTGTTACAAGTCAAGATGGAATGACTGCTGACTGGTACTACTTTGAGCACAAGTTCCTTGACGATGTTTCCCGAAAGATCTGTAATGGTGTCCGTGGTGTAAACCGTGTTGTGCAAGATATTACGTCAAAGCCACCATCAACAATTGAATGGGAATAG

>Glyma08g01820.2   sequence type=CDS   gene model=Glyma08g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCCCAAAAACGTGAAATCGGACCTGGTTCTCATTCTCGATTACGGTTCCCAATACACCCACCTCATCACTCGCCGCATCCGCAGCCTCTCGGTGTTCTCCCTATGCATCTCCGGCACCTCCTCTCTTTCAACCATCACCGACCTCAACCCCTCCGTCGTCATTCTCTCCGGGGGCCCCCACTCCGTCCACACCCCGGACTCCCCCTCCTTCCCCGACGGCTTCCTCCAGTGGGCCCATTCCAATGGCGTCACCGTCCTCGGCATCTGCTACGGCCTCCAGCTCCTCGTTCAGCGCCTCGGCGGCGACGTCCGCGTCGGAGACAAGCAGGAGTATGGCCGCATGGAAATCTGCGCTGACAAACCCTCCGCGCTCTTCGGCCCCGAGAAAGTCGGTAAACGACAGGTCGTCTGGATGAGCCACGGCGACGAGGCCGTCACGCTACCCGATGGATTCCATGTCGTCGCCCGCAGCGACCAGGGCGCCGTCGCCGCCATTGAAAACCCCTCCGCCAAGCTCTACGGCCTCCAGTATCACCCTGAGGTGACGCATTCGGAGGAAGGAATGGAGACACTGCAGCGTTTTCTGTTTGATGTTTGTGGTGTGGGAGCAGGGTGGAAGATGGAGGATGTGATGGAGGAGGAGATAAAGGTGATTAAAGAAACGGTGGGGCCTGATGAGCATGTGATTTGTGCTTTGTCTGGTGGTGTGGATTCCACTGTTGCTGCTACTCTCGTGCATAAGGCTATTGGGGATAGGCTTCATTGTGTGTTTGTGGATAATGGGTTGCTTAGGTATAAGGAGAGGGAGCGGGTGATGGAGACTTTTGAGAAGGATCTTCATTTGCCGGTTGTGTGTGTTGATGCCGTGGGTCAGTTTCTTACCAAGTTGAAAGGTGTCGTGGATCCAGAGACTAAGAGGAAGATTATTGGGAAGGAGTTTATTTGTATTTTTGATGCTTTTGCTCAGGAGCTTGAGGGGAAGCTGGGGAAGAAGCCTTCTTATTTGGTTCAGGGGACGTTGTATCCTGATGTGATTGAATCTTGTCCTCCACCTGGGACCGGGAGAACCCATTCCCATACCATTAAGAGTCATCATAATGTTGGAGGCCTTCCAAAAGATATGAAGTTGAAGCTTATTGAACCACTTAAGCTTCTGTTCAAGGATGAGGTTCGTCAATTAGGGAGGATCTTGGATGTTCCTGTGGCCTTTCTAAAACGTCACCCATTCCCAGGGCCTGGTCTTGCAGTGAGAGTCCTGGGTGATGTGACTGAAGGAAATGCTTTAGATATTCTCCGACTGGTTGATGAAATTTTCATTCAGTCAATCAAGGATGCTGGGCTCTATGATTCAATATGGCAAGCTTTTGCAGTTTTCTTGCCTGTTCGATCGGTTGGAGTTCAAGGTGATCAAAGAACACACTCCCATGTTGTTGCTCTCAGAGCTGTTACAAGTCAAGATGGAATGACTGCTGACTGGTAA

Predicted protein sequences of Glyma08g01820

Limit To All Plant Sequences

>Glyma08g01820.1   sequence type=predicted peptide   gene model=Glyma08g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPKNVKSDLVLILDYGSQYTHLITRRIRSLSVFSLCISGTSSLSTITDLNPSVVILSGGPHSVHTPDSPSFPDGFLQWAHSNGVTVLGICYGLQLLVQRLGGDVRVGDKQEYGRMEICADKPSALFGPEKVGKRQVVWMSHGDEAVTLPDGFHVVARSDQGAVAAIENPSAKLYGLQYHPEVTHSEEGMETLQRFLFDVCGVGAGWKMEDVMEEEIKVIKETVGPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMETFEKDLHLPVVCVDAVGQFLTKLKGVVDPETKRKIIGKEFICIFDAFAQELEGKLGKKPSYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILDVPVAFLKRHPFPGPGLAVRVLGDVTEGNALDILRLVDEIFIQSIKDAGLYDSIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVSRKICNGVRGVNRVVQDITSKPPSTIEWE*

>Glyma08g01820.2   sequence type=predicted peptide   gene model=Glyma08g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPKNVKSDLVLILDYGSQYTHLITRRIRSLSVFSLCISGTSSLSTITDLNPSVVILSGGPHSVHTPDSPSFPDGFLQWAHSNGVTVLGICYGLQLLVQRLGGDVRVGDKQEYGRMEICADKPSALFGPEKVGKRQVVWMSHGDEAVTLPDGFHVVARSDQGAVAAIENPSAKLYGLQYHPEVTHSEEGMETLQRFLFDVCGVGAGWKMEDVMEEEIKVIKETVGPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMETFEKDLHLPVVCVDAVGQFLTKLKGVVDPETKRKIIGKEFICIFDAFAQELEGKLGKKPSYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILDVPVAFLKRHPFPGPGLAVRVLGDVTEGNALDILRLVDEIFIQSIKDAGLYDSIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADW*

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