Glyma08g01550 - SoyBase

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Report for Sequence Feature Glyma08g01550

Feature Type:	gene_model
Chromosome:	Gm08
Start:	974872
stop:	978984
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g01550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G63260	AT	Annotation by Michelle Graham. TAIR10: tetraspanin10 \| chr1:23466975-23468945 REVERSE LENGTH=258	SoyBase	E_val: 7.00E-147	ISS
GO:0007568	GO-bp	Annotation by Michelle Graham. GO Biological Process: aging	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
PTHR19282	Panther	TETRASPANIN	JGI		ISS
PTHR19282:SF136	Panther		JGI		ISS
PF00335	PFAM	Tetraspanin family	JGI		ISS
UniRef100_F4I214	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tetraspanin10 n=1 Tax=Arabidopsis thaliana RepID=F4I214_ARATH	SoyBase	E_val: 3.00E-137	ISS
UniRef100_I1KP80	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KP80_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g01550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g01550 not represented in the dataset	Glyma08g01550 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g01550

Paralog	Evidence	Comments
Glyma05g38020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g01550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g012500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g01550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g01550

Limit To All Plant Sequences

>Glyma08g01550.3   sequence type=transcript   gene model=Glyma08g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGATGTTCTCTAGGTTAAGCAACAAATATTTCCAACAGCCTGTGTTTACGTTGTACTGGGAATATGTGACCACAAGTTTGAACCCTCCATAATTAAAGACAGCTTTCATTTCTTTTCATTTTTAATATTTTTTTTTCCAAAAAAAAAAAAGAGACAGCTTTCTTTGGTTTGAGATACTGTTACGCTCGAGTGTGCGTAGCATTGGGTATCGTGTCGTAAGATGTTGGATTTCTTAGCGTACACCGTGCGGCGCATCTTCATCAAACATAATGCACTCGCTTCTCCATTATGCTTCATCATCATCATCATCATCATCATGTCAAACTGAAACTGAAACCTTAACCCTTATATCCCATTCGCTTCTCTTTTATTTTATTTTATTTTGTTTCCAGAACTGGTAGAAACAAAACGGAATTCTTTTGAATAAAGTAAATGTTTTAAAGTTAAACCCAGAAGAATATTCATTCAGACACTTCAAGTTTTCCCCTCCGCGGAACAAAATGGGGATGGGAACTAGCACCTTTGTTACTAGATGGATCAACTTTCTCACCATGCTTTTGGCCATTGTTGTGATAATATTTGGAGTGTGGATGAGCACTCATCATGATGGCTGCCGAAAGTCTCTCACTGTGCCTGTAATAGGCCTCGGAGCAGTTATTTTCTTAATATCTGTAGTTGGCTTTTTGGGTGCCCTGAAAAACAACTCCATACTATTATGGATTTATCTGATCACGTTGTTCTTTGTCTTGGTGGGAATCCTGGTCTTCACAGTATTGGTGTTCATCGTGACTAACAATGGATCGGGTCATAGTGTTACTGGCCTGAGGTATAAGGAATACCAACTTCAAGATTTTAGTTCTTTGTTTCTCAAAGAGTTAAACAATTCTCGTAACTGGGAAAGGTTGAAGGTTTGTCTTGTCAAATCTGAAGACTGCAATAACCTATCCAAAAAATATAAGACTCTTAAACAATATAAATCAGCTAAATTATCACCAATTGAAGCTGGCTGCTGCCGACCTCCTTCCCAATGTGGATATCCTGCTGTAAATGCATCCTACTATGACTTGACCTTTCATCCAGTTAGCCCAAACAATGACTGCAAGCGGTACAAGAATTCTCGAGCCATCAAATGCTATGATTGTGACTCTTGCAAGTAAGCATGCATGCCCATGCTCCATTTCTGTTTTTCTAGAGTATTATATACTTTGTGGGATGCTGTGCGAGACGAAATGCTGCCAGGAGCCATTCTAAAGCTTGAAGGGAACCTCCTCTATCTATGCACCCATCATCATATCAAATGCTTATTGAATTGTTAAAGAGGATATCAGTGTCCTCAAATTCGTGTTATTTTTAGGACCCCTTGGTGATGGATTGTGTAATCGTTGTGAACACCATGACTTGATTTGTTTTATTATTTGATCTAATGTGAATAGAAAATCCAAAATCAGCAACCTCTACACGCCACAGATTAACTTCTTGTTTGTTCGCTAAGATAATATTTGAAAATAAATCACCTTTTATCAGTTTAACG

>Glyma08g01550.4   sequence type=transcript   gene model=Glyma08g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGATGTTCTCTAGGTTAAGCAACAAATATTTCCAACAGCCTGTGTTTACGTTGTACTGGGAATATGTGACCACAAGTTTGAACCCTCCATAATTAAAGACAGCTTTCATTTCTTTTCATTTTTAATATTTTTTTTTCCAAAAAAAAAAAAGAGACAGCTTTCTTTGGTTTGAGATACTGTTACGCTCGAGTGTGCGTAGCATTGGGTATCGTGTCGTAAGATGTTGGATTTCTTAGCGTACACCGTGCGGCGCATCTTCATCAAACATAATGCACTCGCTTCTCCATTATGCTTCATCATCATCATCATCATCATCATGTCAAACTGAAACTGAAACCTTAACCCTTATATCCCATTCGCTTCTCTTTTATTTTATTTTATTTTGTTTCCAGAACTGGTAGAAACAAAACGGAATTCTTTTGAATAAAGTAAATGTTTTAAAGTTAAACCCAGAAGAATATTCATTCAGACACTTCAAGTTTTCCCCTCCGCGGAACAAAATGGGGATGGGAACTAGCACCTTTGTTACTAGATGGATCAACTTTCTCACCATGCTTTTGGCCATTGTTGTGATAATATTTGGAGTGTGGATGAGCACTCATCATGATGGCTGCCGAAAGTCTCTCACTGTGCCTGTAATAGGCCTCGGAGCAGTTATTTTCTTAATATCTGTAGTTGGCTTTTTGGGTGCCCTGAAAAACAACTCCATACTATTATGGATTTATCTGATCACGTTGTTCTTTGTCTTGGTGGGAATCCTGGTCTTCACAGTATTGGTGTTCATCGTGACTAACAATGGATCGGGTCATAGTGTTACTGGCCTGAGGTATAAGGAATACCAACTTCAAGATTTTAGTTCTTTGTTTCTCAAAGAGTTAAACAATTCTCGTAACTGGGAAAGGTTGAAGGTTTGTCTTGTCAAATCTGAAGACTGCAATAACCTATCCAAAAAATATAAGACTCTTAAACAATATAAATCAGCTAAATTATCACCAATTGAAGCTGGCTGCTGCCGACCTCCTTCCCAATAAGAAATCAGTGCACATGTCTGATATTGTTTAAGTTGGGGTTTTATGTAACTTAGATGTGGATATCCTGCTGTAAATGCATCCTACTATGACTTGACCTTTCATCCAGTTAGCCCAAACAATGACTGCAAGCGGTACAAGAATTCTCGAGCCATCAAATGCTATGATTGTGACTCTTGCAAGGCTGGTGTGGCACAATACATGAAAACCGAGTGGAGAGTTGTTGCAATATTTAATGTTGTTTTATTTGTTGTCTTGAGTATTATATACTTTGTGGGATGCTGTGCGAGACGAAATGCTGCCAGGAGCCATTCTAAAGCTTGAAGGGAACCTCCTCTATCTATGCACCCATCATCATATCAAATGCTTATTGAATTGTTAAAGAGGATATCAGTGTCCTCAAATTCGTGTTATTTTTAGGACCCCTTGGTGATGGATTGTGTAATCGTTGTGAACACCATGACTTGATTTGTTTTATTATTTGATCTAATGTGAATAGAAAATCCAAAATCAGCAACCTCTACACGCCACAGATTAACTTCTTGTTTGTTCGCTAAGATAATATTTGAAAATAAATCACCTTTTATCAGTTTAACG

Coding sequences of Glyma08g01550

Limit To All Plant Sequences

>Glyma08g01550.2   sequence type=CDS   gene model=Glyma08g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATGGGAACTAGCACCTTTGTTACTAGATGGATCAACTTTCTCACCATGCTTTTGGCCATTGTTGTGATAATATTTGGAGTGTGGATGAGCACTCATCATGATGGCTGCCGAAAGTCTCTCACTGTGCCTGTAATAGGCCTCGGAGCAGTTATTTTCTTAATATCTGTAGTTGGCTTTTTGGGTGCCCTGAAAAACAACTCCATACTATTATGGATTTATCTGATCACGTTGTTCTTTGTCTTGGTGGGAATCCTGGTCTTCACAGTATTGGTGTTCATCGTGACTAACAATGGATCGGGTCATAGTGTTACTGGCCTGAGGTATAAGGAATACCAACTTCAAGATTTTAGTTCTTTGTTTCTCAAAGAGTTAAACAATTCTCGTAACTGGGAAAGGTTGAAGGTTTGTCTTGTCAAATCTGAAGACTGCAATAACCTATCCAAAAAATATAAGACTCTTAAACAATATAAATCAGCTAAATTATCACCAATTGAAGCTGGCTGCTGCCGACCTCCTTCCCAATGTGGATATCCTGCTGTAAATGCATCCTACTATGACTTGACCTTTCATCCAGTTAGCCCAAACAATGACTGCAAGCGGTACAAGAATTCTCGAGCCATCAAATGCTATGATTGTGACTCTTGCAAGGCTGGTGTGGCACAATACATGAAAACCGAGTGGAGAGTTGTTGCAATATTTAATGTTGTTTTATTTGTTGTCTTGAGTATTATATACTTTGTGGGATGCTGTGCGAGACGAAATGCTGCCAGGAGCCATTCTAAAGCTTGA

>Glyma08g01550.3   sequence type=CDS   gene model=Glyma08g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATGGGAACTAGCACCTTTGTTACTAGATGGATCAACTTTCTCACCATGCTTTTGGCCATTGTTGTGATAATATTTGGAGTGTGGATGAGCACTCATCATGATGGCTGCCGAAAGTCTCTCACTGTGCCTGTAATAGGCCTCGGAGCAGTTATTTTCTTAATATCTGTAGTTGGCTTTTTGGGTGCCCTGAAAAACAACTCCATACTATTATGGATTTATCTGATCACGTTGTTCTTTGTCTTGGTGGGAATCCTGGTCTTCACAGTATTGGTGTTCATCGTGACTAACAATGGATCGGGTCATAGTGTTACTGGCCTGAGGTATAAGGAATACCAACTTCAAGATTTTAGTTCTTTGTTTCTCAAAGAGTTAAACAATTCTCGTAACTGGGAAAGGTTGAAGGTTTGTCTTGTCAAATCTGAAGACTGCAATAACCTATCCAAAAAATATAAGACTCTTAAACAATATAAATCAGCTAAATTATCACCAATTGAAGCTGGCTGCTGCCGACCTCCTTCCCAATGTGGATATCCTGCTGTAAATGCATCCTACTATGACTTGACCTTTCATCCAGTTAGCCCAAACAATGACTGCAAGCGGTACAAGAATTCTCGAGCCATCAAATGCTATGATTGTGACTCTTGCAAGTAA

>Glyma08g01550.4   sequence type=CDS   gene model=Glyma08g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATGGGAACTAGCACCTTTGTTACTAGATGGATCAACTTTCTCACCATGCTTTTGGCCATTGTTGTGATAATATTTGGAGTGTGGATGAGCACTCATCATGATGGCTGCCGAAAGTCTCTCACTGTGCCTGTAATAGGCCTCGGAGCAGTTATTTTCTTAATATCTGTAGTTGGCTTTTTGGGTGCCCTGAAAAACAACTCCATACTATTATGGATTTATCTGATCACGTTGTTCTTTGTCTTGGTGGGAATCCTGGTCTTCACAGTATTGGTGTTCATCGTGACTAACAATGGATCGGGTCATAGTGTTACTGGCCTGAGGTATAAGGAATACCAACTTCAAGATTTTAGTTCTTTGTTTCTCAAAGAGTTAAACAATTCTCGTAACTGGGAAAGGTTGAAGGTTTGTCTTGTCAAATCTGAAGACTGCAATAACCTATCCAAAAAATATAAGACTCTTAAACAATATAAATCAGCTAAATTATCACCAATTGAAGCTGGCTGCTGCCGACCTCCTTCCCAATAA

Predicted protein sequences of Glyma08g01550

Limit To All Plant Sequences

>Glyma08g01550.2   sequence type=predicted peptide   gene model=Glyma08g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMGTSTFVTRWINFLTMLLAIVVIIFGVWMSTHHDGCRKSLTVPVIGLGAVIFLISVVGFLGALKNNSILLWIYLITLFFVLVGILVFTVLVFIVTNNGSGHSVTGLRYKEYQLQDFSSLFLKELNNSRNWERLKVCLVKSEDCNNLSKKYKTLKQYKSAKLSPIEAGCCRPPSQCGYPAVNASYYDLTFHPVSPNNDCKRYKNSRAIKCYDCDSCKAGVAQYMKTEWRVVAIFNVVLFVVLSIIYFVGCCARRNAARSHSKA*

>Glyma08g01550.3   sequence type=predicted peptide   gene model=Glyma08g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMGTSTFVTRWINFLTMLLAIVVIIFGVWMSTHHDGCRKSLTVPVIGLGAVIFLISVVGFLGALKNNSILLWIYLITLFFVLVGILVFTVLVFIVTNNGSGHSVTGLRYKEYQLQDFSSLFLKELNNSRNWERLKVCLVKSEDCNNLSKKYKTLKQYKSAKLSPIEAGCCRPPSQCGYPAVNASYYDLTFHPVSPNNDCKRYKNSRAIKCYDCDSCK*

>Glyma08g01550.4   sequence type=predicted peptide   gene model=Glyma08g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMGTSTFVTRWINFLTMLLAIVVIIFGVWMSTHHDGCRKSLTVPVIGLGAVIFLISVVGFLGALKNNSILLWIYLITLFFVLVGILVFTVLVFIVTNNGSGHSVTGLRYKEYQLQDFSSLFLKELNNSRNWERLKVCLVKSEDCNNLSKKYKTLKQYKSAKLSPIEAGCCRPPSQ*

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