Glyma08g01480 - SoyBase

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Report for Sequence Feature Glyma08g01480

Feature Type:	gene_model
Chromosome:	Gm08
Start:	939421
stop:	942487
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g01480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12780	AT	Annotation by Michelle Graham. TAIR10: UDP-D-glucose/UDP-D-galactose 4-epimerase 1 \| chr1:4356124-4358120 REVERSE LENGTH=351	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006012	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactose metabolic process	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0046369	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactose biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003978	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucose 4-epimerase activity	SoyBase	N/A	ISS
GO:0016857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: racemase and epimerase activity, acting on carbohydrates and derivatives	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG1371	KOG	UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF39	Panther	CDP-3, 6-DIDEOXY-D-GLYCERO-L-GLYCERO-4-HEXULOSE-4-REDUCTASE	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_B0M3E8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucose 4-epimerase n=1 Tax=Pisum sativum RepID=B0M3E8_PEA	SoyBase	E_val: 0	ISS
UniRef100_I1KP71	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KP71_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g01480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g01480 not represented in the dataset	Glyma08g01480 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g01480

Paralog	Evidence	Comments
Glyma05g38120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g01480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g011800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g01480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g01480

Limit To All Plant Sequences

>Glyma08g01480.2   sequence type=transcript   gene model=Glyma08g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAATATAAAAGAAGAGAAAGGCGCGCGCGAAACTAACAAACCAAAACGGATTAGATAGAAAGAAAGGGAAAGCAACTAAACATTCTCTCTCAGTCCTTAAATTCTCATCGCAACACAACACTCTCATCCACACTCCAAAATGGTGACCTCGTCGCAAAAGATTCTGGTTACCGGCGGTGCCGGTTTCATAGGCACCCACACCGTGGTCCAGCTTCTCAAAGGAGGCTTCAGTGTTTCAATAATCGACAATTTCGATAACTCCGTCGTGGAAGCAGTGGACCGCGTCCGCCAAGTGGTGGGCCCTCAGCTTTCTCAGAACCTGGAATTCACCCAGGGCGATCTCAGGAATAGGGATGACTTGGAGAAACTCTTCTCCAGAACAACTTTTGATGCCGTGATCCACTTTGCTGGCCTGAAAGCGGTTGCTGAAAGCGTTTCCAAGCCCCGTCGCTATTTTGATTTTAATTTGGTCGGCACCATCAACCTCTACCAAGTTATGGCAAAGTATAATTGCAGAAAGATGGTTTTCTCATCATCTGCAACCGTTTATGGCCAACCTGAAAAGATACCGTGTGAGGAGGATTTCAGGTTACAAGCTATGAATCCCTATGGACGGACCAAGCTTTTCCTGGAAGAAATTGCCCGAGATATTCAGAAAGCTGAACCAGAATGGAAGATCATATTACTGAGGTACTTCAATCCGGTTGGGGCTCATGAAAGTGGTAAACTCGGTGAAGATCCCAAGGGCATCCCAAATAACCTCATGCCTTACATTCAGCAAGTAGCCGTTGGAAGATTGCCGGAACTCAATGTATATGGGCATGATTATCCCACAAGGGATGGCTCTGCGATCCGGGACTATATCCATGTGATGGACTTAGCAGATGGTCATATTGCTGCCTTGCGAAAGCTCTTCACAACAGAGAACATAGGTTGTACTGCTTACAACCTGGGAACTGGTCGTGGAACATCCGTGCTTGAAATGGTTACAGCATTTGAAAAGGCGTCTGGCAAGAAAATTCCAGTAAAATTATGTCCAAGAAGACCGGGAGATGCTACTGAGGTTTATGCATCTACAGAGAGAGCTGAGAAAGAACTTGGATGGAAGTAAGTACTTTAGTCCGTTGTGTGTGACAAGCACGGTTAAATACTTAAATCAGTAATCATTTGGATTTTTGACAATCGATTTTGTTGAC

Coding sequences of Glyma08g01480

Limit To All Plant Sequences

>Glyma08g01480.1   sequence type=CDS   gene model=Glyma08g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGACCTCGTCGCAAAAGATTCTGGTTACCGGCGGTGCCGGTTTCATAGGCACCCACACCGTGGTCCAGCTTCTCAAAGGAGGCTTCAGTGTTTCAATAATCGACAATTTCGATAACTCCGTCGTGGAAGCAGTGGACCGCGTCCGCCAAGTGGTGGGCCCTCAGCTTTCTCAGAACCTGGAATTCACCCAGGGCGATCTCAGGAATAGGGATGACTTGGAGAAACTCTTCTCCAGAACAACTTTTGATGCCGTGATCCACTTTGCTGGCCTGAAAGCGGTTGCTGAAAGCGTTTCCAAGCCCCGTCGCTATTTTGATTTTAATTTGGTCGGCACCATCAACCTCTACCAAGTTATGGCAAAGTATAATTGCAGAAAGATGGTTTTCTCATCATCTGCAACCGTTTATGGCCAACCTGAAAAGATACCGTGTGAGGAGGATTTCAGGTTACAAGCTATGAATCCCTATGGACGGACCAAGCTTTTCCTGGAAGAAATTGCCCGAGATATTCAGAAAGCTGAACCAGAATGGAAGATCATATTACTGAGGTACTTCAATCCGGTTGGGGCTCATGAAAGTGGTAAACTCGGTGAAGATCCCAAGGGCATCCCAAATAACCTCATGCCTTACATTCAGCAAGTAGCCGTTGGAAGATTGCCGGAACTCAATGTATATGGGCATGATTATCCCACAAGGGATGGCTCTGCGATCCGGGACTATATCCATGTGATGGACTTAGCAGATGGTCATATTGCTGCCTTGCGAAAGCTCTTCACAACAGAGAACATAGGTTGTACTGCTTACAACCTGGGAACTGGTCGTGGAACATCCGTGCTTGAAATGGTTACAGCATTTGAAAAGGCGTCTGGCAAGAAAATTCCAGTAAAATTATGTCCAAGAAGACCGGGAGATGCTACTGAGGTTTATGCATCTACAGAGAGAGCTGAGAAAGAACTTGGATGGAAAGCAAAATATGGTGTGGATGAGATGTGCAGGGACCAATGGAATTGGGCAAAGAACAATCCCCAGGGTTACACGGGGAAGCCTTGA

>Glyma08g01480.2   sequence type=CDS   gene model=Glyma08g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGACCTCGTCGCAAAAGATTCTGGTTACCGGCGGTGCCGGTTTCATAGGCACCCACACCGTGGTCCAGCTTCTCAAAGGAGGCTTCAGTGTTTCAATAATCGACAATTTCGATAACTCCGTCGTGGAAGCAGTGGACCGCGTCCGCCAAGTGGTGGGCCCTCAGCTTTCTCAGAACCTGGAATTCACCCAGGGCGATCTCAGGAATAGGGATGACTTGGAGAAACTCTTCTCCAGAACAACTTTTGATGCCGTGATCCACTTTGCTGGCCTGAAAGCGGTTGCTGAAAGCGTTTCCAAGCCCCGTCGCTATTTTGATTTTAATTTGGTCGGCACCATCAACCTCTACCAAGTTATGGCAAAGTATAATTGCAGAAAGATGGTTTTCTCATCATCTGCAACCGTTTATGGCCAACCTGAAAAGATACCGTGTGAGGAGGATTTCAGGTTACAAGCTATGAATCCCTATGGACGGACCAAGCTTTTCCTGGAAGAAATTGCCCGAGATATTCAGAAAGCTGAACCAGAATGGAAGATCATATTACTGAGGTACTTCAATCCGGTTGGGGCTCATGAAAGTGGTAAACTCGGTGAAGATCCCAAGGGCATCCCAAATAACCTCATGCCTTACATTCAGCAAGTAGCCGTTGGAAGATTGCCGGAACTCAATGTATATGGGCATGATTATCCCACAAGGGATGGCTCTGCGATCCGGGACTATATCCATGTGATGGACTTAGCAGATGGTCATATTGCTGCCTTGCGAAAGCTCTTCACAACAGAGAACATAGGTTGTACTGCTTACAACCTGGGAACTGGTCGTGGAACATCCGTGCTTGAAATGGTTACAGCATTTGAAAAGGCGTCTGGCAAGAAAATTCCAGTAAAATTATGTCCAAGAAGACCGGGAGATGCTACTGAGGTTTATGCATCTACAGAGAGAGCTGAGAAAGAACTTGGATGGAAGTAA

Predicted protein sequences of Glyma08g01480

Limit To All Plant Sequences

>Glyma08g01480.1   sequence type=predicted peptide   gene model=Glyma08g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTSSQKILVTGGAGFIGTHTVVQLLKGGFSVSIIDNFDNSVVEAVDRVRQVVGPQLSQNLEFTQGDLRNRDDLEKLFSRTTFDAVIHFAGLKAVAESVSKPRRYFDFNLVGTINLYQVMAKYNCRKMVFSSSATVYGQPEKIPCEEDFRLQAMNPYGRTKLFLEEIARDIQKAEPEWKIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRLPELNVYGHDYPTRDGSAIRDYIHVMDLADGHIAALRKLFTTENIGCTAYNLGTGRGTSVLEMVTAFEKASGKKIPVKLCPRRPGDATEVYASTERAEKELGWKAKYGVDEMCRDQWNWAKNNPQGYTGKP*

>Glyma08g01480.2   sequence type=predicted peptide   gene model=Glyma08g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTSSQKILVTGGAGFIGTHTVVQLLKGGFSVSIIDNFDNSVVEAVDRVRQVVGPQLSQNLEFTQGDLRNRDDLEKLFSRTTFDAVIHFAGLKAVAESVSKPRRYFDFNLVGTINLYQVMAKYNCRKMVFSSSATVYGQPEKIPCEEDFRLQAMNPYGRTKLFLEEIARDIQKAEPEWKIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRLPELNVYGHDYPTRDGSAIRDYIHVMDLADGHIAALRKLFTTENIGCTAYNLGTGRGTSVLEMVTAFEKASGKKIPVKLCPRRPGDATEVYASTERAEKELGWK*

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