SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G50580 | AT | Annotation by Michelle Graham. TAIR10: SUMO-activating enzyme 1B | chr5:20585500-20587401 FORWARD LENGTH=320 | SoyBase | E_val: 5.00E-149 | ISS |
| GO:0006464 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular protein modification process | SoyBase | N/A | ISS |
| GO:0016925 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein sumoylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008641 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: small protein activating enzyme activity | SoyBase | N/A | ISS |
| GO:0019948 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: SUMO activating enzyme activity | SoyBase | N/A | ISS |
| KOG2014 | KOG | SMT3/SUMO-activating complex, AOS1/RAD31 component | JGI | ISS | |
| PTHR10953 | Panther | UBIQUITIN-ACTIVATING ENZYME E1 | JGI | ISS | |
| PF00899 | PFAM | ThiF family | JGI | ISS | |
| UniRef100_B9RAD1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA damage tolerance protein rad31, putative n=1 Tax=Ricinus communis RepID=B9RAD1_RICCO | SoyBase | E_val: 2.00E-157 | ISS |
| UniRef100_I1K6N8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K6N8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g01440 not represented in the dataset |
Glyma08g01440 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g38190 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g011400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g01440.1 sequence type=CDS gene model=Glyma08g01440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGGAACTGTAGCTGAGTTTTGCAAGAATATTGTTCTGGCTGGAGTAGGTAGTCTGACTTTAGTAGATGACCGGGTTGCCACTGAGGAAGTGCTTTCCTCGAATTTTCTCATCCCTCCTGATGAGAATGCGTATAGTGGAAAGACCCTTGGTGAGCTTTGTTGTAATTCACTTAAAGACTTCAACCCTATGGTTCGTGTTTCCATTGAGAAAGGTGATTTGTCGAGTTTTGATGTTGAATTCTTCAGCAAATTCGATGTTGTTGTCGTCAGTTGTTGCTCGCTTTCAGCCAAAAAACTGGCTAATGACAAATGCAGAAAGCTATCAAAACGTGTAGCATTTTATGCTGTTGACTGCAGGGATTCTTGTGGTGAAATTTTCGTCGATTTGCAGGATTATAAATATTCAAAGAAAAAACAGGATGAAACTGTTAAATGTGACCTGAAATATCCATCATTCGAGGATGCATTATCTGTACCTTGGAGGGCACTTCACAGGAGAATGTCAAAGCTGTACTATGCTATGAGAGTAATAGAAAAGTTTGAAGAGGCTGAGGGACGTAGCGCAGGGGAAGTTTCCATTGCAGATCTTTCTGGTGTTCTCAAACTGAAAAAGGAGATTTGTACTGCACAATCTCTCAATGAATCTCATGTGCCTGATACTCTTCTAGAAAGATTGGTGACAAATGCAATAGAATTTCCGCCTGTTTGTGCAATTATAGGGGGAATCCTTGGACAGGAGGTTATCAAAGCAATTTCTGGGAAAGGAGACCCCCTAAAGAATTTTTTCTTTTTTGATGCTTTTGATGGGAAGGGCATTATAGAAGACCTCTCTCCGAAGTGA
>Glyma08g01440.1 sequence type=predicted peptide gene model=Glyma08g01440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKGTVAEFCKNIVLAGVGSLTLVDDRVATEEVLSSNFLIPPDENAYSGKTLGELCCNSLKDFNPMVRVSIEKGDLSSFDVEFFSKFDVVVVSCCSLSAKKLANDKCRKLSKRVAFYAVDCRDSCGEIFVDLQDYKYSKKKQDETVKCDLKYPSFEDALSVPWRALHRRMSKLYYAMRVIEKFEEAEGRSAGEVSIADLSGVLKLKKEICTAQSLNESHVPDTLLERLVTNAIEFPPVCAIIGGILGQEVIKAISGKGDPLKNFFFFDAFDGKGIIEDLSPK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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