SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G63540 | AT | Annotation by Michelle Graham. TAIR10: Domain of unknown function (DUF1767) | chr5:25441033-25444373 REVERSE LENGTH=644 | SoyBase | E_val: 9.00E-150 | ISS |
| GO:0000724 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination | SoyBase | N/A | ISS |
| GO:0048451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal formation | SoyBase | N/A | ISS |
| GO:0048453 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sepal formation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR14790 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR14790:SF1 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF08585 | PFAM | Domain of unknown function (DUF1767) | JGI | ISS | |
| UniRef100_Q01LD1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0132D06.6 protein n=1 Tax=Oryza sativa RepID=Q01LD1_ORYSA | SoyBase | E_val: 2.00E-128 | ISS |
| UniRef100_UPI00023382A4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023382A4 related cluster n=1 Tax=unknown RepID=UPI00023382A4 | SoyBase | E_val: 0 | ISS |
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Glyma08g01380 not represented in the dataset |
Glyma08g01380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g010700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g01380.1 sequence type=CDS gene model=Glyma08g01380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTACTCGAAAAGAGAGCACTGCACATTTTCAAAAAACTCCCCTTGTCGTGCAAAAAATGCCGCCTATACGCATACGCCGTCTCAGGCTCGACTCCGATTCCGACGGAGAAGAACAAGACCCACTCCAACCCCAATCCGAGCCACAAACCCATTTTCCGGTTGAAATCTCCGACGACGAGGACTTCCTCGACGTCCTCGACAGCCTCCCTCCGCCCTCTCCCGCCTGTCCTGTCACCGACTTCCTCCGCCGCCTTGGACTGTCACCCAAGAGTGACTGGCTCACTTCCTGCCTCCGCGAATTCCAGTCCTCCGTTCCGGCCTTTGAACACCTCGACGTCGCCGCAAAAGCCAAACGCTGTTTCGAGCAGTTTCTCTACGCCGACATGAATTTCTGCGGAAGTGGCATACTCCCTCCCAACGTAGACGCCATGCACCTTAACGTTCTCCCCGGTCCCTATGTATTGCAGGTTGATGAAATAATTAATATGACTTGTCCTCTACGAGGCAGATATGAAAAGGCAAATCCTGGAATTAAAAGATGTTTGAAGTTATCAATGACTGATGGCATTCAAAGAGTATTTGGAATGGAGTATAGGCCCATCGAAGCTCTTGAAGTTTGTGCCTCTTCTGGTTTAAAGGTTACTATCTCTAATGTACATGTGCGTCGTGGACTTCTTATGCTGGTACCTGAAACCATTGAAATATTGGGGGGATTGGTTGAGGAGCTGGATGCTGCCCGAAATCGCCTGGTTGGAGAATTAAAGAAGCCACCTAGACCTAGGGGGAGAAGAACTAGAAACGGAGTGTTTATTCCTTTAGCGACTAGAGCAACTCTTGCTGCGTGGCCTCCAGGTGGAGTTGATGATCTTGCACGCAGTGGCTCCACGCTGCACAGTACTGATCCTGTACAGGAAAACAATCAAGGTTCTGGCCCGAGCATGTCTGGCACTGGTAACAGTAATTCAATACCCCACATGGCGTCAAATGCTGATGCTATGAACATGGATATGTCTAGAGATACCAATTCTGTTTCCCGTGGTAGCTCTATGGCTAACCAGCTCTCTTCTGTCATGTCAAAGGCTGAGGAGATGCACATAGATGCTTCTAATGTCACCAGGGAATATTCTGTTGACCATCAGTCTTCTAATATGGTTTCAAATGTTTCAGCAGCATATAATGATACTGTTCATATAACAAGAGAAAGTTCTGTGGCTACTGAGTGCCCTCCCGTTGTTGAAAGTGTTGAGACATACAGGGATAGAACTCCAGTAGCCACAGATAGTTCTCATCCACGAAGAACCTCTTCCACTGTTAGGGAATATTCTGTTGACAATCGGTTTTCTAACATGGTTTCAAATGTTTCAGTGGTGCATAATGACACTGTTCATATAACAAGGGAAAGTTCTGCAACTACTGAGTGCCCTCCTGTTGTTGAAAATGTTGAGACATACAGAGATAGAACTCCAGCAGCCACTGATAGTTCTCATCCACGAAGAGCCTCTTCCTCTGTTTTAAACACCAGCGATGTCGAGATGGGTGATGCCAGTGACCATCCACTCATACTGTCTGGAGACCAAGAGGTCCCGTTCACATACATGGCTAGTTTGTCAGCCAAGTGGGCTAAAATGAAAGAGGAAGCTCCTGCAATTCGGGGTAAAATCAAGTGCTTTTTGACTGGTGTAAAAGGATTCCGGTACAAGAAGAGGACATCATATGAGCTTCAGGCATATGTAGACGATGGTAGCCTTATTTCTGAAATCCTCATTGATCATGATGTTGTACAGAAAGGAATTGGTTTTTCTCCTGAGGAGGTAACTGCGGCCATTTCTTCTCCTGACACGAAAACTGTCCAACAAATGAGGGATACAATGCATAAATTTCAAGCATTTTTAGCAAACTTTGAGGGAATAATTCTTGTGGAATTAAATAAAAAATCTTCCCTTCCACTTGCCCTAGAGATGAGTCAAGGCTGTCCTCAATCTGATGCACGGTTACTTCTGAGAAGGCTGAAGTCTCTTAACCCTCCACAAGTTCAAAAACCTACGGATCCAATTGAATTATCCCCGTAA
>Glyma08g01380.1 sequence type=predicted peptide gene model=Glyma08g01380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPTRKESTAHFQKTPLVVQKMPPIRIRRLRLDSDSDGEEQDPLQPQSEPQTHFPVEISDDEDFLDVLDSLPPPSPACPVTDFLRRLGLSPKSDWLTSCLREFQSSVPAFEHLDVAAKAKRCFEQFLYADMNFCGSGILPPNVDAMHLNVLPGPYVLQVDEIINMTCPLRGRYEKANPGIKRCLKLSMTDGIQRVFGMEYRPIEALEVCASSGLKVTISNVHVRRGLLMLVPETIEILGGLVEELDAARNRLVGELKKPPRPRGRRTRNGVFIPLATRATLAAWPPGGVDDLARSGSTLHSTDPVQENNQGSGPSMSGTGNSNSIPHMASNADAMNMDMSRDTNSVSRGSSMANQLSSVMSKAEEMHIDASNVTREYSVDHQSSNMVSNVSAAYNDTVHITRESSVATECPPVVESVETYRDRTPVATDSSHPRRTSSTVREYSVDNRFSNMVSNVSVVHNDTVHITRESSATTECPPVVENVETYRDRTPAATDSSHPRRASSSVLNTSDVEMGDASDHPLILSGDQEVPFTYMASLSAKWAKMKEEAPAIRGKIKCFLTGVKGFRYKKRTSYELQAYVDDGSLISEILIDHDVVQKGIGFSPEEVTAAISSPDTKTVQQMRDTMHKFQAFLANFEGIILVELNKKSSLPLALEMSQGCPQSDARLLLRRLKSLNPPQVQKPTDPIELSP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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