SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G50920 | AT | Annotation by Michelle Graham. TAIR10: CLPC homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929 | SoyBase | E_val: 0 | ISS |
| GO:0006289 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide-excision repair | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process | SoyBase | N/A | ISS |
| GO:0010380 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0019538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein metabolic process | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0042744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0045036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast | SoyBase | N/A | ISS |
| GO:0045037 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into chloroplast stroma | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009532 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid stroma | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009706 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0031897 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Tic complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004176 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent peptidase activity | SoyBase | N/A | ISS |
| GO:0004518 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nuclease activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG1051 | KOG | Chaperone HSP104 and related ATP-dependent Clp proteases | JGI | ISS | |
| PTHR11638 | Panther | ATP-DEPENDENT CLP PROTEASE | JGI | ISS | |
| PTHR11638:SF19 | Panther | gb def: atp-dependent clp protease atp-binding subunit [campylobacter jejuni] | JGI | ISS | |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | ISS | |
| PF02151 | PFAM | UvrB/uvrC motif | JGI | ISS | |
| PF02861 | PFAM | Clp amino terminal domain | JGI | ISS | |
| PF07724 | PFAM | AAA domain (Cdc48 subfamily) | JGI | ISS | |
| PF10431 | PFAM | C-terminal, D2-small domain, of ClpB protein | JGI | ISS | |
| UniRef100_I1KP32 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KP32_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_P35100 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein ClpC, chloroplastic n=1 Tax=Pisum sativum RepID=CLPC_PEA | SoyBase | E_val: 0 | ISS |
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Glyma08g01140 not represented in the dataset |
Glyma08g01140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g38510 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g008400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g01140.1 sequence type=CDS gene model=Glyma08g01140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTAGGGTTTTAGCTCAGTCTACTGGTATGCCTGGCCTACTGAGTGGGCGAAGGCATGGGCCGCATAAAGGATCAGGAAAAACGAAAAGATCTGTTAAAATGATGAGTACCTTACGAATTCCTGCTTTAAGAATGTCGAGTTTCTCTGGATTACGGACACTTAATCCTTTGGATTCTGTGTCGAGACCACGACACACTTTTCCGTTGACTACAACTTCTAGGCGCGAGAGGGCTAAAAGATGTGTACCTAAAGCTATGTTTGAGCGTTTCACAGAGAAGGCAATCAAAGTAATTATGCTAGCCCAGGAGGAAGCAAGACGACTGGGGCACAATTTTGTTGGAACGGAACAGATTCTATTGGGTCTCATTGGCGAAGGAACCGGCATTGCTGCTAAGGTTCTGAAGTCAATGGGAATTAACCTCAAGGATGCTCGGGTTGAAGTGGAGAAAATTATTGGAAGGGGTAGTGGATTTGTTGCTGTTGAGATTCCGTTTACTTCCCGTGCAAAGCGTGTTTTGGAACTCTCACTGGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCTGAGCACTTGCTTCTTGGTCTCCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTGAAAATTTGGCTGCTGATCCAAACAATATTCGCGCTCAGGTTATCCGCATGGTTGGTGAGGGTGCTGACAGTGTTGGTGCTACTGTTGGCCCTGGAAGTAGTAATAACAACAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCGGAAGAGGGGAAATTGGATCCTGTCATGGGTAGGCAGCCACAAATTGAACGTGTCACTCAAATTTTGGGTCGTCGTACAAAAAATAATCCTTGTCTTATTGGGGAACCTGGGGTCGGGAAGACAGCTATTGCTGAAGGTCTTGCCCAAAGGATTGCAAATGGTGATGTACCTGAAACCATAGAGGGAAAGAAGGTTATAACCCTTGATATGGGTCTGCTGGTAGCTGGAACTAAATATCGTGGAGAATTTGAAGAGAGATTGAAGAAACTAATGGAGGAAATCAAACAAAGTGATGAGATAATACTCTTTATTGATGAAGTGCACACTCTAATTGGAGCTGGAGCAGCTGAGGGAGCAATTGATGCTGCAAATATATTAAAACCAGCTCTTGCCAGAGGTGAACTGCAGTGTATAGGAGCCACAACACTGGATGAATATAGGAAGCACATTGAAAAGGATCCAGCTTTGGAGAGGCGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTCAATGAAACCATACAAATACTGAAAGGACTCAGAGAACGCTATGAAATTCACCACAAGCTTCATTACACAGATGATGCTCTTGTAGCTGCTGCCCAGCTATCACACCAATATATTAGTGATCGATTTTTGCCAGACAAAGCTATAGATTTAATTGATGAAGCAGGTTCTCGAGTCCGGCTTCAACATGCACAGTTACCTGAAGAAGCAAGAGAGCTTGACAAGGAGGTTAGACAGATTGTAAAGGAGAAAGAAGAATCTGTTCGCAATCAAGACTTTGAGAAGGCCGGAGAGCTAAGAGATAAAGAAATGGATCTTAAGGCGCAGATATCTGCACTTATAGAAAAAGGCAAGGAGATGAGTAAGGCAGAAAGTGAGGCAGGAGATGAAGGTCCCATGGTCACTGAAGTTGACATACAACATATTGTCTCCTCCTGGACTGGTATTCCTGTGGAGAAAGTCTCGACTGATGAATCTGATCGCCTCCTCAAAATGGAAGAGACTTTACACAAGCGAGTCATAGGTCAGGATGAAGCAGTGAAAGCCATAAGCAGGGCCATCCGTCGAGCCAGGGTTGGACTGAAGAACCCTAACCGTCCAATTGCCAGCTTCATCTTTTCTGGGCCAACTGGTGTGGGGAAGTCTGAGTTGGCCAAAGCATTGGCTGCATACTACTTTGGTTCTGAAGAAGCCATGATTCGGCTTGACATGAGTGAATTCATGGAAAGGCACACAGTCTCGAAACTTATTGGTTCACCTCCTGGATACGTTGGTTACACTGAGGGTGGTCAACTGACTGAGGCAGTTCGCCGTCGTCCCTATACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGATTAACAGACAGCAAAGGAAGAACTGTGGACTTCAAGAACACGCTTCTTATAATGACATCAAATGTTGGAAGCAGTGTAATTGAGAAAGGAGGCCGTAAAATAGGATTTGACCTTGATTATGATGAGAAGGATAGCAGTTACAACCGAATCAAGAGCTTGGTGACTGAGGAACTGAAGCAATACTTTAGGCCAGAGTTCTTGAATAGGTTGGATGAAATGATTGTTTTCAGGCAACTCACAAAATTGGAGGTTAAGGAGATAGCAGACATAATGCTGAAGGAGGTGTTCCAGAGACTGAAAGCTAAAGAGATTGATCTTTCAGTGACAGAAAGATTTAGGGAGAGGGTGGTTGACGAAGGATATAATCCTAGTTATGGGGCTAGGCCTCTAAGAAGAGCCATAATGCAACTTTTGGAGGATAGCATGGCTGAGAAGATGCTTGCTAGAGAGATTAAGGAGGGTGACTCAGTTATAGTTGATTCTGATTCTGAGGGTAATGTGATTGTGCTCAACGGTAGTAGTGGTGCCCCAGATTCACTAGAAGATGTCTTAGTTAGTTGA
>Glyma08g01140.1 sequence type=predicted peptide gene model=Glyma08g01140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARVLAQSTGMPGLLSGRRHGPHKGSGKTKRSVKMMSTLRIPALRMSSFSGLRTLNPLDSVSRPRHTFPLTTTSRRERAKRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTSRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLAADPNNIRAQVIRMVGEGADSVGATVGPGSSNNNKMPTLEEYGTNLTKLAEEGKLDPVMGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVNETIQILKGLRERYEIHHKLHYTDDALVAAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRQIVKEKEESVRNQDFEKAGELRDKEMDLKAQISALIEKGKEMSKAESEAGDEGPMVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKAKEIDLSVTERFRERVVDEGYNPSYGARPLRRAIMQLLEDSMAEKMLAREIKEGDSVIVDSDSEGNVIVLNGSSGAPDSLEDVLVS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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