Glyma08g01020 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g01020

Feature Type:	gene_model
Chromosome:	Gm08
Start:	561957
stop:	570062
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g01020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61900	AT	Annotation by Michelle Graham. TAIR10: Calcium-dependent phospholipid-binding Copine family protein \| chr5:24855908-24859150 REVERSE LENGTH=578	SoyBase	E_val: 0	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009270	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to humidity	SoyBase	N/A	ISS
GO:0009626	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009690	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin metabolic process	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010186	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular defense response	SoyBase	N/A	ISS
GO:0019725	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular homeostasis	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0045793	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell size	SoyBase	N/A	ISS
GO:0060548	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of cell death	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0005544	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium-dependent phospholipid binding	SoyBase	N/A	ISS
KOG1327	KOG	Copine	JGI		ISS
PTHR10857	Panther	COPINE	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
PF07002	PFAM	Copine	JGI		ISS
UniRef100_B9RA61	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Copine, putative n=1 Tax=Ricinus communis RepID=B9RA61_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KP22	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KP22_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g01020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g01020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g007500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g01020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g01020

Limit To All Plant Sequences

>Glyma08g01020.2   sequence type=transcript   gene model=Glyma08g01020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGGTATGGGAATGTAGAAAGAAGATAAATAATAGGATATTCCGGGTCTGGTTTTCTTTTCTCGATATTCAAATCAATTTCCGACTTTGGAGTCTTTGAGGTCAGGTCACACCTACTACCCGTTTACTTCACCCAGTCAGTCAGTCTATGGGCAACTGCTGCTCCGACGTCGCTGGCGGCCAATCTGCCATCGGCGGCACCGCCGCCGGCCACCTCAATCCGGCCAACGCTCCCAACGACGCCGTCGATCGCTTCCTCAGGTCTCGCGGCTACAACGGCCTCTTCTCTCAGATCGAGCTGTCGTTTTCTGCTTCTGGCTTGCGTGATCGGGATGTGCTCTCCAAGAGTGATCCAATGATGGTTCTTTATGCAAGAGGAAAAAATGCAGCACTCACAGAACTTGGCCGGACAGAAGTAATTCTGAATTCATTAAATCCTACATGGATTACTAAACACACTCTCATATATAATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAACATAGATGTAAAGATGCTTAAGCTAGAAGAGCAGCAATATCTAGGTGAGGCAACCTGTGCACTATCTGAGATAATTACAAAGTTTGACCGATCAATGACATTAGATTTACACAGAAGAGAAGATTCTATCAGATCTACCCAGTCCCAAAACTGTGGAAAGCTCTTGGTGCATGCTGAAGAATGTGTTAGTTCAAAGACTACAATAGAGATGATTCTCAGGTGTTCAGATTTGGAATATAGGGATCTCTTCTCAAGAAGTGATCCCTTTTTATTGCTATCAAAAGTTGTGGAAGGTGGTAGCCATATTCCAATTTGTAAAACAGAAGTTATAAAGAATGATCACAACCCAATATGGAAGCCAGTGTTCTTGAATATTCAACAAGTAGGAAGCAAGGAAAGTCCTTTGATTATAGAGTGCTATAACTTCAATAGCAATGGCAAACATGATTTGATGGGAAAAGTGCAGAAATCTTTGGTGGAGCTGGAGAAGCTTTATTCAGGTGGCCAAGGAGAAAATTTTATTTCGTCTGCTCCTGCGGGTCATAATTCTCATAACAAGGTGTTAAAAAGCCAGTTATTTGTGGACAAATTTTCTGAGAGTATCCAATATAGTTTCCTGGATTACTTGGCTGGGGGATTTGAATTGAACTTCATGGTGGCCATTGATTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCGAATGCATACCAGAGGGCAGTTTTAGAGGTTGGGGAGGTGTTACAGTATTATGATTCAGACAAGCGATTTCCTACATGGGGATTTGGAGCACGACCAATTGATGCTCCTGTCTCCCATTGTTTCAACCTGAATGGAAGCAGCCATTGCTGTGAGGTGGAAGGCATCCAAGGAATTATGATGGCATACACGAGTGCCCTGCTTAATGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATCATCACAGATGGAGTAGTGACTGATCTCCAAGAAACAAAAGATGCTCTCGTTAAAGCATCTGATCTACCATTATCAATCCTTATTGTTGGCGTAGGAGGAGCTGATTTCAAAGAAATGGAGATTTTGGATGCTGACAAAGGAGAGAGGCTTGAAAGTTCATCTGGTCGCGTTGCTTCACGTGATATAGTCCAGTTTGTTCCATTCCGTGACGTTCAAAGTAGGTATTAGTTTGCAAATTATAACTTTGTCAAATGACTT

Coding sequences of Glyma08g01020

Limit To All Plant Sequences

>Glyma08g01020.1   sequence type=CDS   gene model=Glyma08g01020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAACTGCTGCTCCGACGTCGCTGGCGGCCAATCTGCCATCGGCGGCACCGCCGCCGGCCACCTCAATCCGGCCAACGCTCCCAACGACGCCGTCGATCGCTTCCTCAGGTCTCGCGGCTACAACGGCCTCTTCTCTCAGATCGAGCTGTCGTTTTCTGCTTCTGGCTTGCGTGATCGGGATGTGCTCTCCAAGAGTGATCCAATGATGGTTCTTTATGCAAGAGGAAAAAATGCAGCACTCACAGAACTTGGCCGGACAGAAGTAATTCTGAATTCATTAAATCCTACATGGATTACTAAACACACTCTCATATATAATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAACATAGATGTAAAGATGCTTAAGCTAGAAGAGCAGCAATATCTAGGTGAGGCAACCTGTGCACTATCTGAGATAATTACAAAGTTTGACCGATCAATGACATTAGATTTACACAGAAGAGAAGATTCTATCAGATCTACCCAGTCCCAAAACTGTGGAAAGCTCTTGGTGCATGCTGAAGAATGTGTTAGTTCAAAGACTACAATAGAGATGATTCTCAGGTGTTCAGATTTGGAATATAGGGATCTCTTCTCAAGAAGTGATCCCTTTTTATTGCTATCAAAAGTTGTGGAAGGTGGTAGCCATATTCCAATTTGTAAAACAGAAGTTATAAAGAATGATCACAACCCAATATGGAAGCCAGTGTTCTTGAATATTCAACAAGTAGGAAGCAAGGAAAGTCCTTTGATTATAGAGTGCTATAACTTCAATAGCAATGGCAAACATGATTTGATGGGAAAAGTGCAGAAATCTTTGGTGGAGCTGGAGAAGCTTTATTCAGGTGGCCAAGGAGAAAATTTTATTTCGTCTGCTCCTGCGGGTCATAATTCTCATAACAAGGTGTTAAAAAGCCAGTTATTTGTGGACAAATTTTCTGAGAGTATCCAATATAGTTTCCTGGATTACTTGGCTGGGGGATTTGAATTGAACTTCATGGTGGCCATTGATTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCGAATGCATACCAGAGGGCAGTTTTAGAGGTTGGGGAGGTGTTACAGTATTATGATTCAGACAAGCGATTTCCTACATGGGGATTTGGAGCACGACCAATTGATGCTCCTGTCTCCCATTGTTTCAACCTGAATGGAAGCAGCCATTGCTGTGAGGTGGAAGGCATCCAAGGAATTATGATGGCATACACGAGTGCCCTGCTTAATGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATCATCACAGATGGAGTAGTGACTGATCTCCAAGAAACAAAAGATGCTCTCGTTAAAGCATCTGATCTACCATTATCAATCCTTATTGTTGGCGTAGGAGGAGCTGATTTCAAAGAAATGGAGATTTTGGATGCTGACAAAGGAGAGAGGCTTGAAAGTTCATCTGGTCGCGTTGCTTCACGTGATATAGTCCAGTTTGTTCCATTCCGTGACGTTCAAAGTGGAGAAATTTCAGTAGTTCAAGCACTTTTAGCTGAATTACCTACTCAATTTTTAAGTTACATGCGGAGCAGAAATATCCTACCGAATTCCTAG

>Glyma08g01020.2   sequence type=CDS   gene model=Glyma08g01020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAACTGCTGCTCCGACGTCGCTGGCGGCCAATCTGCCATCGGCGGCACCGCCGCCGGCCACCTCAATCCGGCCAACGCTCCCAACGACGCCGTCGATCGCTTCCTCAGGTCTCGCGGCTACAACGGCCTCTTCTCTCAGATCGAGCTGTCGTTTTCTGCTTCTGGCTTGCGTGATCGGGATGTGCTCTCCAAGAGTGATCCAATGATGGTTCTTTATGCAAGAGGAAAAAATGCAGCACTCACAGAACTTGGCCGGACAGAAGTAATTCTGAATTCATTAAATCCTACATGGATTACTAAACACACTCTCATATATAATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAACATAGATGTAAAGATGCTTAAGCTAGAAGAGCAGCAATATCTAGGTGAGGCAACCTGTGCACTATCTGAGATAATTACAAAGTTTGACCGATCAATGACATTAGATTTACACAGAAGAGAAGATTCTATCAGATCTACCCAGTCCCAAAACTGTGGAAAGCTCTTGGTGCATGCTGAAGAATGTGTTAGTTCAAAGACTACAATAGAGATGATTCTCAGGTGTTCAGATTTGGAATATAGGGATCTCTTCTCAAGAAGTGATCCCTTTTTATTGCTATCAAAAGTTGTGGAAGGTGGTAGCCATATTCCAATTTGTAAAACAGAAGTTATAAAGAATGATCACAACCCAATATGGAAGCCAGTGTTCTTGAATATTCAACAAGTAGGAAGCAAGGAAAGTCCTTTGATTATAGAGTGCTATAACTTCAATAGCAATGGCAAACATGATTTGATGGGAAAAGTGCAGAAATCTTTGGTGGAGCTGGAGAAGCTTTATTCAGGTGGCCAAGGAGAAAATTTTATTTCGTCTGCTCCTGCGGGTCATAATTCTCATAACAAGGTGTTAAAAAGCCAGTTATTTGTGGACAAATTTTCTGAGAGTATCCAATATAGTTTCCTGGATTACTTGGCTGGGGGATTTGAATTGAACTTCATGGTGGCCATTGATTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCGAATGCATACCAGAGGGCAGTTTTAGAGGTTGGGGAGGTGTTACAGTATTATGATTCAGACAAGCGATTTCCTACATGGGGATTTGGAGCACGACCAATTGATGCTCCTGTCTCCCATTGTTTCAACCTGAATGGAAGCAGCCATTGCTGTGAGGTGGAAGGCATCCAAGGAATTATGATGGCATACACGAGTGCCCTGCTTAATGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATCATCACAGATGGAGTAGTGACTGATCTCCAAGAAACAAAAGATGCTCTCGTTAAAGCATCTGATCTACCATTATCAATCCTTATTGTTGGCGTAGGAGGAGCTGATTTCAAAGAAATGGAGATTTTGGATGCTGACAAAGGAGAGAGGCTTGAAAGTTCATCTGGTCGCGTTGCTTCACGTGATATAGTCCAGTTTGTTCCATTCCGTGACGTTCAAAGTAGGTATTAG

Predicted protein sequences of Glyma08g01020

Limit To All Plant Sequences

>Glyma08g01020.1   sequence type=predicted peptide   gene model=Glyma08g01020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNCCSDVAGGQSAIGGTAAGHLNPANAPNDAVDRFLRSRGYNGLFSQIELSFSASGLRDRDVLSKSDPMMVLYARGKNAALTELGRTEVILNSLNPTWITKHTLIYNFEVVQVLVFRVYDVDTQFHNIDVKMLKLEEQQYLGEATCALSEIITKFDRSMTLDLHRREDSIRSTQSQNCGKLLVHAEECVSSKTTIEMILRCSDLEYRDLFSRSDPFLLLSKVVEGGSHIPICKTEVIKNDHNPIWKPVFLNIQQVGSKESPLIIECYNFNSNGKHDLMGKVQKSLVELEKLYSGGQGENFISSAPAGHNSHNKVLKSQLFVDKFSESIQYSFLDYLAGGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRPNAYQRAVLEVGEVLQYYDSDKRFPTWGFGARPIDAPVSHCFNLNGSSHCCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGERLESSSGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLSYMRSRNILPNS*

>Glyma08g01020.2   sequence type=predicted peptide   gene model=Glyma08g01020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNCCSDVAGGQSAIGGTAAGHLNPANAPNDAVDRFLRSRGYNGLFSQIELSFSASGLRDRDVLSKSDPMMVLYARGKNAALTELGRTEVILNSLNPTWITKHTLIYNFEVVQVLVFRVYDVDTQFHNIDVKMLKLEEQQYLGEATCALSEIITKFDRSMTLDLHRREDSIRSTQSQNCGKLLVHAEECVSSKTTIEMILRCSDLEYRDLFSRSDPFLLLSKVVEGGSHIPICKTEVIKNDHNPIWKPVFLNIQQVGSKESPLIIECYNFNSNGKHDLMGKVQKSLVELEKLYSGGQGENFISSAPAGHNSHNKVLKSQLFVDKFSESIQYSFLDYLAGGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRPNAYQRAVLEVGEVLQYYDSDKRFPTWGFGARPIDAPVSHCFNLNGSSHCCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGERLESSSGRVASRDIVQFVPFRDVQSRY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain