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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G07400 | AT | Annotation by Michelle Graham. TAIR10: forkhead-associated domain-containing protein / FHA domain-containing protein | chr5:2340814-2345321 FORWARD LENGTH=1084 | SoyBase | E_val: 0 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0008081 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016818 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | SoyBase | N/A | ISS |
| KOG2031 | KOG | Tyrosyl-DNA phosphodiesterase | JGI | ISS | |
| PTHR12415 | Panther | TYROSYL-DNA PHOSPHODIESTERASE 1 | JGI | ISS | |
| PF00498 | PFAM | FHA domain | JGI | ISS | |
| PF06087 | PFAM | Tyrosyl-DNA phosphodiesterase | JGI | ISS | |
| PF08797 | PFAM | HIRAN domain | JGI | ISS | |
| UniRef100_G7LGI2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tyrosyl-DNA phosphodiesterase n=1 Tax=Medicago truncatula RepID=G7LGI2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KP08 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KP08_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g00870 not represented in the dataset |
Glyma08g00870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g33270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g005800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g00870.1 sequence type=CDS gene model=Glyma08g00870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGCCTCCACCATGATCGACCATGATTCCAATCACAAGAGACCCTTCGCACACGACCCTTCTTCTTCTCTCAACATGAAACTTAGAATTATATCATCGGCCTCCGTCAATTTTAAAAACTTCGATGTCCCTCTCCTTTCCTCCACACAAAACGCCACCGTTTCGCGCTGCGACTCCATGCACCTTCGCGCGGATCAGCCGTACTCGATCGGGCGCCGACCCCGCTACTGCGAGTTCGTCTTCCTCGACCGGCGCGTGAGCAAGCGCCACTGCCAAGTCCTCTTCGACGCTTCCCTCCGCAAACTCTACATCCTCAACGGCGTTCTTCTGCACACCCACCACGACTCCACCGCCGCCACGTGTCGCCTCCTCGTTCACGAGTTCAGAAAAAGGGCGATGATGTCATTTCACGGCAACGGTGTCGCGCTTCGAGAAGCTTCCAACGGGGTTTTCGTGAACGGCGTCGAGATTCAAAAGGGAAAAGCGGTTGAGTTATCGGTTGGAGATAGGGTTTCGCTGGTTTGTGGGAACGAGAACGGTTCTTGCGGGATTGGGAACGGAATTGGGTTTGTTGTTGAGAGAATTGATTTTGAAGGGTGTGGTGATGAAATTGATGGGTTAAAAACATTCTCCGGACACTCGCAGAGTGGGAAGAGGAATAAGAGGGTTTTTGCTGTGAAGGCTAATGATTCGAGGTATGAGGGTGTTGTTGGGAGAGCAAGGTTTCTTCAAGATTGGTGCAGAGATATATTGCTTAGTAATGACCCTGTGTTGCGCATTCTGCACGATCAATCTAAGTGTGCCCCTGGTAATGCTGAAGTGCAATCAAGTTTGGAATTGATTGGTGAAAGTAAAGTGAAGAATTTGGACGCAAAAGTGAGAGTTGATGTTGCTGACGAGGTTCCTAATGAGGTGAAAGTGTTAGATTCTGTAGGGAAGGATAATTGTAATCCTTCTCCTTCTGTCGGTGGTGATTGGCAGGGAAAGTGTGGTGGTGGCAGCTATTATCCGCCACCTGGCAAGAAGTTTTATCTTAATCGCCTTGAATTTATGGACCGCGACTCCTTGACGTGTCATCTGTCGATATCCCTCCCCGAACTTATTCATCCTGTGGAAAGTGTTTCGAGGATGTTTATTGCAACGTTTACAAGTGACATAAAATGGTTCTTGACATATTGCAAGGTTCCTTTTCATCTACCAGTTACAATTGCATGCCACAATACTGAGAGATGTTGGAGTTCAAAACCTGATGAAAGAGTATTTGTGCCTTACCGGGATTATCCTAACCTAGTTGTCGTGTGTCCTCAATTCCCTGAAACCATAGCATTTGGTAACAACCGCAAGAGACAGGGGATTGCTTGCCATCATCCAAAGTTGATTGTTTTGCAAAGGAAAGATAGTATTCGAATTGTTATTACGTCTGCTAATTTGGTGGAAAAACAGTGGAACAGTGTGACTAACACTATATGGTGGCAAGATTTCCCCCATGCCCCTTCTGTTGATTTTGCATCACTTTTCCCAAAAATTGGCGATGTTGACATTCATCAAGGCTCAAAATGTGACTTTGCTGCTACGTTGGCTGGGTTTATGGCATCTCTTGTTATTGATGTACCCAGCCAGGCTCACTGGATTACTCAGCTGACAAAATATGACTTTGGAGGTGCAACAGGACATCTTGTTGCTTCTGTACCTGGAATTCACTTTTATAGAACTTCAGTTCTGTCAGAATCTTTTGAGGCTTCTCCTTTTCTTGGTTCAGTTGTGGCATCTGTGGTTGGTTTGAGGCATCTTTTCCGCACTGTGGCAGACTCAAATAGTGCAAGACTAAAAGCACTGGCTTCTTTCCTCGGAAAGTCTTGTAAGAATGTTTATGGGAAGTTGGAGATTGTTTTAAGAAGAAATCCCATTGTGTCTGTTGATGAAAATGCTGTTTGTGTTCTTGTTCCCAACCCAGATCAAACTTTTCAGGGAGATTGTATTCAACTTGGTTTTCTGTCTAGAAATGTAGCAAAATGGGTTTCTCCTCTTTGGGATTGTGGATTCTTCAAGTTTTCTGGATATGTTTGTCCAAAAGAGGTGCTTGCAGCTGCCTTAGGAGAAAGCTGCAATAAAGTACAACTAATACTAAATGTGTCAGAGGGGCATCGTTTTAAAGATATGTCAAAGATGATGCAACCCGAACAAATTGTGGCGTTTTGCTCACTCATTGCTTCAATTCAAAGATGTTATGGCCTTTGGAGATTACAAGAGGTTCTAAATCGATACAGATGGCCTGAATCATTGAAGTCTGAAATTATATACAGTGCATCTTCTATTGGTTCATCCATCAATTCAAAATTTCTTGCTGATTTTTCATCTGCTGTTGGGAAGAAATCATTGCAACATTTTGATTCAGAAGAGTCTGATCCCGAATGGGGCTGCTGGAATGCTAGCGAAGAACTGAAGAATCCTTCTGTTAGGATTATATTCCCCACTATTGAAAGAGTGAAGAATGCTTATAATGGGATTTTGCCTTCAAGATATATTCTTTGCTTCACAGAGAAAACATGGCAAAGGTTGAAGACTTCAAATATACTTCATGATGCCATCCCTCATCCACATGAAAGAATAGGTCATCCAATGCATATCAAGGTGATGCGTAGATGCTTCTGGTCTGGGAGGGATGCACCTTCCGTTGGTTGGGTATACTCCGGGTCTCATAATTTTAGTGCTGCTGCCTGGGGGCGACAAATTTCAAATCCATTTAGGACAAAGGCTGATAGACCTAAAAAAGAGGATCCTTCTGTGAATTATGGGCTTCATATTTGCAATTATGAGCTTGGGATTATATTTACTTTTCCTCCTACAGAAAATAATGGTTGTCTTGAAGTAAAGAGCACAAAATTAGATGATATAATTCTTCCGTTTGTTGTGCCTGCTCCTAAATATAGATCTAGTGATCGGCCAGCTACAAAGCAGGCTATGAGGGAGGTTATGGTTGAACTTGCTGAGCGAGAGAAGGAGAAACATACAGAAGAAGAAATGATGGATGAGCTTGATGATGAAGAGGAATATGTTGAGCTTCCAGAAGAACTGGAAGCAACCAATTATGTTGAACAGGAGAATGAAGATGAGAAAGCATATGCTGATATACTCTGGAGTCAGGTTGATCTGTCACAGAGCAGTTGA
>Glyma08g00870.1 sequence type=predicted peptide gene model=Glyma08g00870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEASTMIDHDSNHKRPFAHDPSSSLNMKLRIISSASVNFKNFDVPLLSSTQNATVSRCDSMHLRADQPYSIGRRPRYCEFVFLDRRVSKRHCQVLFDASLRKLYILNGVLLHTHHDSTAATCRLLVHEFRKRAMMSFHGNGVALREASNGVFVNGVEIQKGKAVELSVGDRVSLVCGNENGSCGIGNGIGFVVERIDFEGCGDEIDGLKTFSGHSQSGKRNKRVFAVKANDSRYEGVVGRARFLQDWCRDILLSNDPVLRILHDQSKCAPGNAEVQSSLELIGESKVKNLDAKVRVDVADEVPNEVKVLDSVGKDNCNPSPSVGGDWQGKCGGGSYYPPPGKKFYLNRLEFMDRDSLTCHLSISLPELIHPVESVSRMFIATFTSDIKWFLTYCKVPFHLPVTIACHNTERCWSSKPDERVFVPYRDYPNLVVVCPQFPETIAFGNNRKRQGIACHHPKLIVLQRKDSIRIVITSANLVEKQWNSVTNTIWWQDFPHAPSVDFASLFPKIGDVDIHQGSKCDFAATLAGFMASLVIDVPSQAHWITQLTKYDFGGATGHLVASVPGIHFYRTSVLSESFEASPFLGSVVASVVGLRHLFRTVADSNSARLKALASFLGKSCKNVYGKLEIVLRRNPIVSVDENAVCVLVPNPDQTFQGDCIQLGFLSRNVAKWVSPLWDCGFFKFSGYVCPKEVLAAALGESCNKVQLILNVSEGHRFKDMSKMMQPEQIVAFCSLIASIQRCYGLWRLQEVLNRYRWPESLKSEIIYSASSIGSSINSKFLADFSSAVGKKSLQHFDSEESDPEWGCWNASEELKNPSVRIIFPTIERVKNAYNGILPSRYILCFTEKTWQRLKTSNILHDAIPHPHERIGHPMHIKVMRRCFWSGRDAPSVGWVYSGSHNFSAAAWGRQISNPFRTKADRPKKEDPSVNYGLHICNYELGIIFTFPPTENNGCLEVKSTKLDDIILPFVVPAPKYRSSDRPATKQAMREVMVELAEREKEKHTEEEMMDELDDEEEYVELPEELEATNYVEQENEDEKAYADILWSQVDLSQSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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