SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G63620 | AT | Annotation by Michelle Graham. TAIR10: GroES-like zinc-binding alcohol dehydrogenase family protein | chr5:25466380-25468296 REVERSE LENGTH=427 | SoyBase | E_val: 0 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0050897 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding | SoyBase | N/A | ISS |
| KOG0022 | KOG | Alcohol dehydrogenase, class III | JGI | ISS | |
| PTHR11695 | Panther | ALCOHOL DEHYDROGENASE RELATED | JGI | ISS | |
| PTHR11695:SF294 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00107 | PFAM | Zinc-binding dehydrogenase | JGI | ISS | |
| PF08240 | PFAM | Alcohol dehydrogenase GroES-like domain | JGI | ISS | |
| UniRef100_G7LFT6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alcohol dehydrogenase-like protein n=1 Tax=Medicago truncatula RepID=G7LFT6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00018909F8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00018909F8 related cluster n=1 Tax=unknown RepID=UPI00018909F8 | SoyBase | E_val: 0 | ISS |
|
Glyma08g00740 not represented in the dataset |
Glyma08g00740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g33140 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g004800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g00740.3 sequence type=transcript gene model=Glyma08g00740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAATAAAAGAAAGTATACTTGATTATACAAATATTTTTAGTAGTGACAATGGATTTGGCATTTGCTGCAAGTTGTATTATAGGTTGAGTTGAATATTAAGGTAGTAAGATGAGACGTCAAGTTTGGATCTCTATCTCATTGTTGATTTAGTATTAAATTTCTATGTAGTTGTTGTTTGTAGTAATCATCAACTCACTCAGTTGCCGTAGGTTGTCGTGATCCATCACAACACTTTGTCACTGAAATTCAGAAAAATGGCATCAGCAATGTTTCGTAGGAACATCATCACCCACTACTCCAAGTTTGCTTCTTCTTTGTCTTCGTTGCCTCGCCATTCCTCAATCTACAACCCTCTCTCTATGTCTGTTTCTTCATTTCATAGCGAAAGTGTTGGTGGTGGTGGTGGGTTGCCATCTTCCATGCGTGGAGCTGTGTATTGGGAACCGAACAAGCCGCTAACCATCGAGGAATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGTTTACCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCAAAGGGCCATGATGATCTATGTGAAGCTTTCTTTGCCTATAACCGGGCAAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTGGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGTCTGTGTTACCAGACTCATTGCCATATACAGAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTACGGCGCTATGGCTCATGCAGCTCAAGTGCGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGAGGTGTTGGTTCTAGTTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGATGTACGGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTTGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAACCACAGACATTTGCTCAATGTACACAAAGTGTGAAGGATGGGGGAAAAGCTGTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGCTTGTTCGCAGAAAGATACAAGTTATTGGCTCCTATGGGGGCAGGGCAAGGCAAGATCTTCCAAAGTTAATTAGACTGGCAGAAACAGGTATCTTCAATCTTGGCCATGCTGTTTCAAGAACATACACTTTTGAGGAGGCGGGAAAAGCATTCCAAGATCTCAATGAAGGAAAAATTGTCGGTCGAGCTGTGATTGAGATAATATAGCTCTATATTCCCAGAAATGCTTTTCTGCAGCAGCAATAGCTATGCTTTTCACACCCCACAAGATATACATGCTTTGGAGTTGCAAGGTGTTGGTACCCTGAGAACATAAATAAATAGATGTCTTCTGATGTTTCATTGCAGGGGCATGTTCAAATGAAAACTGTTTTTCTTTTTGTGCATTTCTTTGCTTCTAACTCATGTAATCAGGTAGGTACACCAAGGTGAAGAATAATAGTCTCTGAATGCTCATCATTGGCGTGTCGTAAAACTGATGATGAAAATGCAGGAAAATAACAGAAAAGCTAGAGATGCTCCAAGAAAGTAAATTAAAAAAAAATGTTTCCGACATAAATTTATGTGCAGATTATGGGTGAATGCGGCTTTTACTTTTTAACTTAACGTACTTGAGCACCCAAATTCTTGAAAATCCATTGTTAAATAATTATTGCATCTCCAAAATGTCAAACAGGATCCTAATTCACA
>Glyma08g00740.1 sequence type=CDS gene model=Glyma08g00740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCAGCAATGTTTCGTAGGAACATCATCACCCACTACTCCAAGTTTGCTTCTTCTTTGTCTTCGTTGCCTCGCCATTCCTCAATCTACAACCCTCTCTCTATGTCTGTTTCTTCATTTCATAGCGAAAGTGTTGGTGGTGGTGGTGGGTTGCCATCTTCCATGCGTGGAGCTGTGTATTGGGAACCGAACAAGCCGCTAACCATCGAGGAATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGTTTACCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCAAAGGGCCATGATGATCTATGTGAAGCTTTCTTTGCCTATAACCGGGCAAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTGGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGTCTGTGTTACCAGACTCATTGCCATATACAGAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTACGGCGCTATGGCTCATGCAGCTCAAGTGCGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGAGGTGTTGGTTCTAGTTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGATGTACGGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTTGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAACCACAGACATTTGCTCAATGTACACAAAGTGTGAAGGATGGGGGAAAAGCTGTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGCTTGTTCGCAGAAAGATACAAGTTATTGGCTCCTATGGGGGCAGGGCAAGGCAAGATCTTCCAAAGTTAATTAGACTGGCAGAAACAGGTATCTTCAATCTTGGCCATGCTGTTTCAAGAACATACACTTTTGAGGAGGCGGGAAAAGCATTCCAAGATCTCAATGAAGGAAAAATTGTCGGTCGAGCTGTGATTGAGATAATATAG >Glyma08g00740.3 sequence type=CDS gene model=Glyma08g00740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCAGCAATGTTTCGTAGGAACATCATCACCCACTACTCCAAGTTTGCTTCTTCTTTGTCTTCGTTGCCTCGCCATTCCTCAATCTACAACCCTCTCTCTATGTCTGTTTCTTCATTTCATAGCGAAAGTGTTGGTGGTGGTGGTGGGTTGCCATCTTCCATGCGTGGAGCTGTGTATTGGGAACCGAACAAGCCGCTAACCATCGAGGAATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGTTTACCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCAAAGGGCCATGATGATCTATGTGAAGCTTTCTTTGCCTATAACCGGGCAAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTGGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGTCTGTGTTACCAGACTCATTGCCATATACAGAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTACGGCGCTATGGCTCATGCAGCTCAAGTGCGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGAGGTGTTGGTTCTAGTTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGATGTACGGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTTGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAACCACAGACATTTGCTCAATGTACACAAAGTGTGAAGGATGGGGGAAAAGCTGTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGCTTGTTCGCAGAAAGATACAAGTTATTGGCTCCTATGGGGGCAGGGCAAGGCAAGATCTTCCAAAGTTAATTAGACTGGCAGAAACAGGTATCTTCAATCTTGGCCATGCTGTTTCAAGAACATACACTTTTGAGGAGGCGGGAAAAGCATTCCAAGATCTCAATGAAGGAAAAATTGTCGGTCGAGCTGTGATTGAGATAATATAG
>Glyma08g00740.1 sequence type=predicted peptide gene model=Glyma08g00740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASAMFRRNIITHYSKFASSLSSLPRHSSIYNPLSMSVSSFHSESVGGGGGLPSSMRGAVYWEPNKPLTIEEFHMPRPKAGEVLIKTKACGVCHSDLHVMKGEIPFTSPCVVGHEITGEVVEHGALTDSKTIERLPVGSRVVGAFIMPCGNCSYCSKGHDDLCEAFFAYNRAKGTLYDGETRLFFRNSGKPAYMYSMGGLAEYCVVPANGVSVLPDSLPYTESAILGCAVFTAYGAMAHAAQVRPGDSVAVIGTGGVGSSCLQIARAFGASDIIAVDVRDEKLQKAKTFGATHTVNSAKEDPIEKILEITGGKGVDVAVEALGKPQTFAQCTQSVKDGGKAVMIGLAQAGSLGEVDINRLVRRKIQVIGSYGGRARQDLPKLIRLAETGIFNLGHAVSRTYTFEEAGKAFQDLNEGKIVGRAVIEII* >Glyma08g00740.3 sequence type=predicted peptide gene model=Glyma08g00740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASAMFRRNIITHYSKFASSLSSLPRHSSIYNPLSMSVSSFHSESVGGGGGLPSSMRGAVYWEPNKPLTIEEFHMPRPKAGEVLIKTKACGVCHSDLHVMKGEIPFTSPCVVGHEITGEVVEHGALTDSKTIERLPVGSRVVGAFIMPCGNCSYCSKGHDDLCEAFFAYNRAKGTLYDGETRLFFRNSGKPAYMYSMGGLAEYCVVPANGVSVLPDSLPYTESAILGCAVFTAYGAMAHAAQVRPGDSVAVIGTGGVGSSCLQIARAFGASDIIAVDVRDEKLQKAKTFGATHTVNSAKEDPIEKILEITGGKGVDVAVEALGKPQTFAQCTQSVKDGGKAVMIGLAQAGSLGEVDINRLVRRKIQVIGSYGGRARQDLPKLIRLAETGIFNLGHAVSRTYTFEEAGKAFQDLNEGKIVGRAVIEII*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
