SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G63770 | AT | Annotation by Michelle Graham. TAIR10: diacylglycerol kinase 2 | chr5:25519293-25522404 FORWARD LENGTH=712 | SoyBase | E_val: 2.00E-95 | ISS |
| GO:0007205 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein kinase C-activating G-protein coupled receptor signaling pathway | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0048527 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004143 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: diacylglycerol kinase activity | SoyBase | N/A | ISS |
| PTHR11255 | Panther | DIACYLGLYCEROL KINASE | JGI | ISS | |
| PTHR11255:SF34 | Panther | JGI | ISS | ||
| PF00130 | PFAM | Phorbol esters/diacylglycerol binding domain (C1 domain) | JGI | ISS | |
| UniRef100_G7LFQ9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Diacylglycerol kinase eta n=1 Tax=Medicago truncatula RepID=G7LFQ9_MEDTR | SoyBase | E_val: 5.00E-115 | ISS |
| UniRef100_I1K533 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K533_SOYBN | SoyBase | E_val: 5.00E-132 | ISS |
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Glyma08g00613 not represented in the dataset |
Glyma08g00613 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g32970 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g003900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g00613.2 sequence type=transcript gene model=Glyma08g00613 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAATTTAATGTCATTATTTCAAAAATACCCTTAAGTTCAAATCTGATTAAGGGTAATTTAAGAGATGTGGTTCTTTTTTTTTTGGTATGAAATCAAGAAAACATGCAATTTCTTTTCCGTCGATACGTCTTGCAATTTGTACTTGAACTCTTTTTGTACCCGCCTGTTCAGATAATTGAATAGCTTTTTTCATTGCTTTACGAAACCAAACTCTATTCTTTAATTGTCCAACTATAAATTCTGCAGAAAGAGAGAATTTTGATACAAAATCTGAGACATTATTGCACTTAAACCAGGTATGTTGGATTAGGAGAAAAAGATGATGACATGCAAGTGTTTTACTACTTTGTTATGTTAGAAAATGATCCTTTAATGCTTTGGCTAACTGGTGGTCCTGCCTGCGCTTCATTTCCAGGTCTTGCCTTTCAAATAAGAAATTTTTTAGATACAAACTTTCTATGTTAATTCCTATAATAACAATAAATAGATTTGGATTGTATTACTATTACCCTTTTATTTGACCAACTAATTCTAATTTGTGTGAACTCCTATATAGATTGTATCACTCGATCTGAATCTGAATTACCCTATGACACCTTACTGTATTACTTAAAAACCTGTTTTGGAAAATAGTTTTATCAAAAAGCTCTTAACTGTAGCCTCATAAGAAAAATACTCCCTCCCGAACTAAAATTGTTATCCATTGCAATGTGTGACAGTTTGGGTCAAATGGTCAGGTTTTATGTTTGACAGAAGAGTTCAATCAAATGAGTTTAACCATGATTGATTTGGGGAATTCCTTTCTGAGGCTTGTCACAAGCCCTGATGCTTCCAGTGCATCTATTTTTGGATGGCTGATCACTGGATCATTTGGACTAATGGCTCTCATATATGCTGTTCTCAAGTGGCAGCGAAGGTCCTCATTGAATTGGATTAAAGCTGCAGCAAGAGAAAAGAAGAAAGTTTGGAAAAAGTTTAAAGTTCCGCTATCCGAGCATTTGTGGGTTGAAGATTTTACTTATAGGGAACAGCCATCCACTTGTTGTTTCTGCTTGACTTCCCTTTGGCCTTTTCAAAATTTAGGTACAACAGCCTCACCGCATGCTCCTCTCCATCGTTGCTCTGTTTGTGGTGTCGCAGCTTATTTCCTTTGTTCTCAGTTTGCAGCAAAGGATTGCAAATGTGTGGCTCAGGCTGGCTTTGGCCATATTCGACACCACTGGTCAGAAAGATGGGTTAATGTGGATGAAAATCATGAGATGTCTGCCTTCTGTTTTTACTGTGATGAGCCATGTGGTGTTCCGTTTGTTAAAGCTTCTCCTACCTGGGATTGCCGGTGGTGTCAGCGCCTCATTCATGTGAAATGTCATAACAAATGAAGCTTTAACAAGGGTACAAAGCTTCTCCTGACTATTTTACCTTTGTACCCTTGTGGCTATTTGTTGAATCCATATAATTCCTAATTATGAAGATTTGCAGGTGACAGGTTATGGATTCAAATGCAAGTTTAGTGGCCATTAAAATAAACGGTTTTACAAGGTGGGGAACGGAAATCAGAGAATCACAAGGAAGGTTGGTGACGCGCGCAGTGAAGCTTCCACTCTTTTTTACTTTGATGACTGGGCCTCTTTGAATAGAAAGTAGGGGCTTCTTTTTACATACCCCTTTTTTCTCTTTGTCTTCACATTGCTCGTCCTTGTTTGACAAAAATATTCTAGTCTATGTAAGACCCAATACTGCAGCGATATTACGAAAATTAGTCTATGTAATTTATGTAATGCATGAAAAAATTACATTTCAAAAACAAGATTTTGTAATGTACTCATATAGCTAGTTAAGTGGAGTTAGGGAGGACTTCAGATGTGTCTATATGTATGAGAATCATAACATTACGCATACATTGCTTGATCTCAGAATCTTTTAAAAGTCATGTTTGGTCCTTGGGTCAGGTGGGCTACACACAAATCGCTTGGATCAGTTACTAAGAAACTTTGCACATGTGTTAAGCTTAAGTCACCGTATTGGATTAAGACACGTGCAATGGGTTCAAAACAAAACGAATGAAGACATATAT
>Glyma08g00613.1 sequence type=CDS gene model=Glyma08g00613 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTTAACCATGATTGATTTGGGGAATTCCTTTCTGAGGCTTGTCACAAGCCCTGATGCTTCCAGTGCATCTATTTTTGGATGGCTGATCACTGGATCATTTGGACTAATGGCTCTCATATATGCTGTTCTCAAGTGGCAGCGAAGGTCCTCATTGAATTGGATTAAAGCTGCAGCAAGAGAAAAGAAGAAAGTTTGGAAAAAGTTTAAAGTTCCGCTATCCGAGCATTTGTGGGTTGAAGATTTTACTTATAGGGAACAGCCATCCACTTGTTGTTTCTGCTTGACTTCCCTTTGGCCTTTTCAAAATTTAGGTACAACAGCCTCACCGCATGCTCCTCTCCATCGTTGCTCTGTTTGTGGTGTCGCAGCTTATTTCCTTTGTTCTCAGTTTGCAGCAAAGGATTGCAAATGTGTGGCTCAGGCTGGCTTTGGCCATATTCGACACCACTGGTCAGAAAGATGGGTTAATGTGGATGAAAATCATGAGATGTCTGCCTTCTGTTTTTACTGTGATGAGCCATGTGGTGTTCCGTTTGTTAAAGCTTCTCCTACCTGGGATTGCCGGTGGTGTCAGCGCCTCATTCATGTGAAATGTCATAACAAATGA >Glyma08g00613.2 sequence type=CDS gene model=Glyma08g00613 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTTAACCATGATTGATTTGGGGAATTCCTTTCTGAGGCTTGTCACAAGCCCTGATGCTTCCAGTGCATCTATTTTTGGATGGCTGATCACTGGATCATTTGGACTAATGGCTCTCATATATGCTGTTCTCAAGTGGCAGCGAAGGTCCTCATTGAATTGGATTAAAGCTGCAGCAAGAGAAAAGAAGAAAGTTTGGAAAAAGTTTAAAGTTCCGCTATCCGAGCATTTGTGGGTTGAAGATTTTACTTATAGGGAACAGCCATCCACTTGTTGTTTCTGCTTGACTTCCCTTTGGCCTTTTCAAAATTTAGGTACAACAGCCTCACCGCATGCTCCTCTCCATCGTTGCTCTGTTTGTGGTGTCGCAGCTTATTTCCTTTGTTCTCAGTTTGCAGCAAAGGATTGCAAATGTGTGGCTCAGGCTGGCTTTGGCCATATTCGACACCACTGGTCAGAAAGATGGGTTAATGTGGATGAAAATCATGAGATGTCTGCCTTCTGTTTTTACTGTGATGAGCCATGTGGTGTTCCGTTTGTTAAAGCTTCTCCTACCTGGGATTGCCGGTGGTGTCAGCGCCTCATTCATGTGAAATGTCATAACAAATGA
>Glyma08g00613.1 sequence type=predicted peptide gene model=Glyma08g00613 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLTMIDLGNSFLRLVTSPDASSASIFGWLITGSFGLMALIYAVLKWQRRSSLNWIKAAAREKKKVWKKFKVPLSEHLWVEDFTYREQPSTCCFCLTSLWPFQNLGTTASPHAPLHRCSVCGVAAYFLCSQFAAKDCKCVAQAGFGHIRHHWSERWVNVDENHEMSAFCFYCDEPCGVPFVKASPTWDCRWCQRLIHVKCHNK* >Glyma08g00613.2 sequence type=predicted peptide gene model=Glyma08g00613 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLTMIDLGNSFLRLVTSPDASSASIFGWLITGSFGLMALIYAVLKWQRRSSLNWIKAAAREKKKVWKKFKVPLSEHLWVEDFTYREQPSTCCFCLTSLWPFQNLGTTASPHAPLHRCSVCGVAAYFLCSQFAAKDCKCVAQAGFGHIRHHWSERWVNVDENHEMSAFCFYCDEPCGVPFVKASPTWDCRWCQRLIHVKCHNK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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