SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19640 | AT | Annotation by Michelle Graham. TAIR10: magnesium transporter 4 | chr3:6820969-6823104 FORWARD LENGTH=484 | SoyBase | E_val: 2.00E-112 | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0030001 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metal ion transport | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0015095 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0046873 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG2662 | KOG | Magnesium transporters: CorA family | JGI | ISS | |
| PTHR13890 | Panther | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | JGI | ISS | |
| UniRef100_G7LFQ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial inner membrane magnesium transporter mrs2 n=1 Tax=Medicago truncatula RepID=G7LFQ5_MEDTR | SoyBase | E_val: 1.00E-158 | ISS |
| UniRef100_I1KNY6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KNY6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g00590 not represented in the dataset |
Glyma08g00590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g003600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g00590.1 sequence type=CDS gene model=Glyma08g00590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAGGCGAAAGACTAGTGTGGGAATAACTACGGGAGTGAAGACTTGGATGGTGGTGTCCTCGGAGACAGGAGAGCAACGCCTTGAGGATGTCGGCAAGCACTCCCTAATGCGGCGGACTGGCTTGCCGGCGCGTGACCTTAGAGTCCTCGATCCCATGCTTTCTCACCCCTCTTCCATCCTTGTACGCGAAAGAGCCATTCTTGTCAACTTGGAACACCTCAAAGGAATCATCACTTCCACCGAGGTTCTCATGATCAACTCTTCCAACCCTTTCTTTCTTCTCTTCCTTCAAGACCTTCTCACCCGTCTTACTCATCAACCTCCCTCACCGATGAGCAATGACATGAATCCTGGTTACGAAGCAAAACCTCCAGCGATGTGTGGTTCTGAAGATTCTTCCCAAAATGTTTCGCATGTGAAAATATCTGAGGAAGTAAAAGCAGATAGCCCTAAGATGGCACCTATAGCTCCCAAGCAGTTACCTTTTGAGTTCCGAGCCCTCGAGACATTTATTGAATCTGCTTGCAGGTGCCTTGAATCTGAGACTTCAAGATTGGAGGAAGAGGCATACCCAGCTTTAGATGAATTGACCTCCCAACTTTGCACACTCAATCTTGAACGTGTAAGGCATATCAAGAGTCGTTTGGTTGCACTTTCTGGTCGTGTGCAGAAGGTAGCAGATGAATTGGAACATTTGCTGGATGATGATAAAGACTTGGCTGAAATGTACTTGACAGAAAAGCTTAATGCTAGTTTATTAGATCAGGCATCATTAAAAGAAGAGTACAATTCTGAATCTGAAGATACCGATCAAAGCGATGAATCAAATTCGGAAAAGTATGACAAATTCCCTGGTCTTAAACTTAATGTTGAGGAATTGGAAATGCTTCTAGAAGCATATTTTGCGCAGACAAATGGAATCTTGCAAAGATTGTTTAGTTTGAGTGAGTACGTGGATGACACTGAGGACTACATCAACATGATGTTAGATGATAAGCGAAATGAGCTTCTGCAGGCAACAATAATATTCAACACCCTAAACATGATACTAAATGCTGGTATTGTGGTTGTAGGATTGTTTGGCATGAATATTCAAATCGAACTCTTTAATGGTAAACCTCGTCAATTTTGGGCTACCACAGGTGGTACATTTGGAGGATGTATACTTTTATTCTTTGTATTTTTTTGGTGGGGGAAGAAAAAATATTTGCTCTCAATAGATCGAGAGTAA
>Glyma08g00590.1 sequence type=predicted peptide gene model=Glyma08g00590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVRRKTSVGITTGVKTWMVVSSETGEQRLEDVGKHSLMRRTGLPARDLRVLDPMLSHPSSILVRERAILVNLEHLKGIITSTEVLMINSSNPFFLLFLQDLLTRLTHQPPSPMSNDMNPGYEAKPPAMCGSEDSSQNVSHVKISEEVKADSPKMAPIAPKQLPFEFRALETFIESACRCLESETSRLEEEAYPALDELTSQLCTLNLERVRHIKSRLVALSGRVQKVADELEHLLDDDKDLAEMYLTEKLNASLLDQASLKEEYNSESEDTDQSDESNSEKYDKFPGLKLNVEELEMLLEAYFAQTNGILQRLFSLSEYVDDTEDYINMMLDDKRNELLQATIIFNTLNMILNAGIVVVGLFGMNIQIELFNGKPRQFWATTGGTFGGCILLFFVFFWWGKKKYLLSIDRE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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