SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G08720 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2841536-2845335 REVERSE LENGTH=719 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PF03364 | PFAM | Polyketide cyclase / dehydrase and lipid transport | JGI | ISS | |
| UniRef100_G7LFP8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cyclase/dehydrase family protein n=1 Tax=Medicago truncatula RepID=G7LFP8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338120 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338120 related cluster n=1 Tax=unknown RepID=UPI0002338120 | SoyBase | E_val: 0 | ISS |
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Glyma08g00580 not represented in the dataset |
Glyma08g00580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g32950 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g003500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g00580.2 sequence type=transcript gene model=Glyma08g00580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACAGCTACATCTTTTTTTGCTTCTCCACACCACTCACTGTTCTCTCTCTTTCTACCATTCCATGACATGATCACCACTTGCAGAACTTCTTCAACCACCAACCTTGGAGGAGCTCAACCTCTTTCTCTGCGCTTCCTATCCAAACCAGCGCCCTTTCTATCTCTGAGCTTCTTCTTCCCCTATCACTCTGCTAACAATGGCATTGCGGTTTCTTCAACCCAGTGCAAACCCAGAATCCGGTGCGACAAAGAAGTAGGGAATGGTAATAATAATGGAATTGAAGAAGATGAAGAGGCTGAACGTGAGGTGCAGTGTGAGGTTCAAGTGGTTTCTTGGAGGGAAAGGAGAGTCAAGGCCGAAATTCCTGTCAATGCTGACATTGAATCCGTTTGGAACGCTCTCACTGATTATGATCATCTCGCTGATTTCATTCCAAATCTTGTGTGGAGTGGGAAAATTCCTTGCCCGTATCCTGGACGGATATGGTTAGAGCAAAGAGGATTTCAAAGGTCAATGTATTGGCACATAGAAGCTCGTGTTGTCTTGGATCTTCAAGAACTCATCAATTCTGCATGGGATCGAGAACTTCACTTTTCCATGGTTGATGGAGACTTTAAGAAGTTTGAGGGCAAATGGTCTGTCAAATCTGGAACAAGATCTTCATCAACTAATTTATCTTATGAAGTTAATGTTATACCAAGATTCAATTTCCCAGCTATTTTCTTGGAAAGGATTATCAAATCAGATCTCCCTGTGAACCTCCAAGCCTTGGCATATAGAGTTGAGAGGAATATTTCAGGAAATCAGAAACTCTCCCTTCCAGAAAATCACTTGGATAAAACTTCTAGTGATATTAATGAGTCATCTGCCCAAAAGATAAATAGTGCTTTGTGTGAAAACAAAGAAGATTTAGTCAACTCAATTCCTGGCACCTTGCCCATGCCTTCCAGTGAGGTGAACATCAATAATTGGGGTGCATTTGGAAAAAGTTGCAGACTTGACAGGCCTTGCATGGTGGATGAAATTCATCTCCGTAGATTTGATGGACTTTTGGAAAATGGAGGTGTTCATCGCTGCGTTTTTGCTAGCATAACAGTTAAAGCTCCTGTTCGTGATGTATGGACTGTAATGTCTTCATATGAGTCTCTTCCTGAGATAGTTCCAAATTTAGCAATCAGTAAGATTTTATCACGAGATAACAATAAAGTCCGCATTCTCCAGGAAGGGTGTAAAGGTCTGCTTTATATGGTGCTTCATGCTCGAGTTGTGCTAGATTTGTGTGAATATCTAGAACAGGAGATCAGTTTCGAACAGGTTGAAGGGGACTTTGACTCATTCCAGGGAAAATGGACTTTCGAGCAACTAGGAAATCATCACACACTGCTAAAGTACTCCCTGGAGTCAAAAATGCGCAAAGACACTTTCCTTTCTGAAGCTATCATGGAAGAGGTCATTTATGAAGATCTCCCATCAAACTTGTGTGCAATAAGAGACTATATCGAGAACAAGACAGCATCAAATATTTTGGAAGCATGTAAGCAGAATACAAATTCAGGGCAACAAACTGTTCCATCTGGCTTTGAAGATGATGACAGCTATTGTTCAGCTGAAGACTTGTCTGATTGCAATGCTCAAAGCTCATCTCAACAAAGACCAAGAGTTCCAGGCTTACAAAGAGATATTGAAGTCCTAAAATCTGAACTTCTGAAATTCATTGCAGAACATGGACAGGAAGGATTTATGCCAATGAGGAAGCAACTTCGTTTGCATGGAAGAGTGGATATTGAGAAGGCTATAAATCGCAAGGGTGGATTCAGAAAGATTGCAACTATAATGAACCTCTCTCTGGCTTACAAACACCGCAAACCAAAGGGTTACTGGGACAATCTTGAAAATTTGCATTATGAGATAAGTAGATTTCAAAGGAGCTGGGGAATGGACCCTTCTTTTATGCCTAGCAGAAGGTCATTTGAACGTGCAGGGCGGTTTGATATAGCACGGGCACTGGAAAAGTGGGGCGGACTTCGTCAGGTTTCTCGCCTCCTCTCCCTCAAGGTGAGGCGGCAACGAAGCAGACAGGGCAAGCTTGCCAAGGATAAGAAAGTTGATGATGATGTAGCATCACCTGATGTAGATCGTGAGATCAAGACACCATCTAGACCCACTGTTTCTCAAGATCCACAAAAATGGCTTACAGAACTAAAACAGTTGGACATAAATTGGGTTGAGTAGTAAAAACAGTATAATGAATTGGATATATGTATATATATTGGTTCAAATATAATTTTATGCTTATTGTAATACATGTTTTTCATGCCCTTGTGTCCGAAGGGACTAAAATTTAGCGGCATAGAATGAAATCTTTCTT
>Glyma08g00580.1 sequence type=CDS gene model=Glyma08g00580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATTGGCACATAGAAGCTCGTGTTGTCTTGGATCTTCAAGAACTCATCAATTCTGCATGGGATCGAGAACTTCACTTTTCCATGGTTGATGGAGACTTTAAGAAGTTTGAGGGCAAATGGTCTGTCAAATCTGGAACAAGATCTTCATCAACTAATTTATCTTATGAAGTTAATGTTATACCAAGATTCAATTTCCCAGCTATTTTCTTGGAAAGGATTATCAAATCAGATCTCCCTGTGAACCTCCAAGCCTTGGCATATAGAGTTGAGAGGAATATTTCAGGAAATCAGAAACTCTCCCTTCCAGAAAATCACTTGGATAAAACTTCTAGTGATATTAATGAGTCATCTGCCCAAAAGATAAATAGTGCTTTGTGTGAAAACAAAGAAGATTTAGTCAACTCAATTCCTGGCACCTTGCCCATGCCTTCCAGTGAGGTGAACATCAATAATTGGGGTGCATTTGGAAAAAGTTGCAGACTTGACAGGCCTTGCATGGTGGATGAAATTCATCTCCGTAGATTTGATGGACTTTTGGAAAATGGAGGTGTTCATCGCTGCGTTTTTGCTAGCATAACAGTTAAAGCTCCTGTTCGTGATGTATGGACTGTAATGTCTTCATATGAGTCTCTTCCTGAGATAGTTCCAAATTTAGCAATCAGTAAGATTTTATCACGAGATAACAATAAAGTCCGCATTCTCCAGGAAGGGTGTAAAGGTCTGCTTTATATGGTGCTTCATGCTCGAGTTGTGCTAGATTTGTGTGAATATCTAGAACAGGAGATCAGTTTCGAACAGGTTGAAGGGGACTTTGACTCATTCCAGGGAAAATGGACTTTCGAGCAACTAGGAAATCATCACACACTGCTAAAGTACTCCCTGGAGTCAAAAATGCGCAAAGACACTTTCCTTTCTGAAGCTATCATGGAAGAGGTCATTTATGAAGATCTCCCATCAAACTTGTGTGCAATAAGAGACTATATCGAGAACAAGACAGCATCAAATATTTTGGAAGCATGTAAGCAGAATACAAATTCAGGGCAACAAACTGTTCCATCTGGCTTTGAAGATGATGACAGCTATTGTTCAGCTGAAGACTTGTCTGATTGCAATGCTCAAAGCTCATCTCAACAAAGACCAAGAGTTCCAGGCTTACAAAGAGATATTGAAGTCCTAAAATCTGAACTTCTGAAATTCATTGCAGAACATGGACAGGAAGGATTTATGCCAATGAGGAAGCAACTTCGTTTGCATGGAAGAGTGGATATTGAGAAGGCTATAAATCGCAAGGGTGGATTCAGAAAGATTGCAACTATAATGAACCTCTCTCTGGCTTACAAACACCGCAAACCAAAGGGTTACTGGGACAATCTTGAAAATTTGCATTATGAGATAAGTAGATTTCAAAGGAGCTGGGGAATGGACCCTTCTTTTATGCCTAGCAGAAGGTCATTTGAACGTGCAGGGCGGTTTGATATAGCACGGGCACTGGAAAAGTGGGGCGGACTTCGTCAGGTTTCTCGCCTCCTCTCCCTCAAGGTGAGGCGGCAACGAAGCAGACAGGGCAAGCTTGCCAAGGATAAGAAAGTTGATGATGATGTAGCATCACCTGATGTAGATCGTGAGATCAAGACACCATCTAGACCCACTGTTTCTCAAGATCCACAAAAATGGCTTACAGAACTAAAACAGTTGGACATAAATTGGGTTGAGTAG >Glyma08g00580.2 sequence type=CDS gene model=Glyma08g00580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACAGCTACATCTTTTTTTGCTTCTCCACACCACTCACTGTTCTCTCTCTTTCTACCATTCCATGACATGATCACCACTTGCAGAACTTCTTCAACCACCAACCTTGGAGGAGCTCAACCTCTTTCTCTGCGCTTCCTATCCAAACCAGCGCCCTTTCTATCTCTGAGCTTCTTCTTCCCCTATCACTCTGCTAACAATGGCATTGCGGTTTCTTCAACCCAGTGCAAACCCAGAATCCGGTGCGACAAAGAAGTAGGGAATGGTAATAATAATGGAATTGAAGAAGATGAAGAGGCTGAACGTGAGGTGCAGTGTGAGGTTCAAGTGGTTTCTTGGAGGGAAAGGAGAGTCAAGGCCGAAATTCCTGTCAATGCTGACATTGAATCCGTTTGGAACGCTCTCACTGATTATGATCATCTCGCTGATTTCATTCCAAATCTTGTGTGGAGTGGGAAAATTCCTTGCCCGTATCCTGGACGGATATGGTTAGAGCAAAGAGGATTTCAAAGGTCAATGTATTGGCACATAGAAGCTCGTGTTGTCTTGGATCTTCAAGAACTCATCAATTCTGCATGGGATCGAGAACTTCACTTTTCCATGGTTGATGGAGACTTTAAGAAGTTTGAGGGCAAATGGTCTGTCAAATCTGGAACAAGATCTTCATCAACTAATTTATCTTATGAAGTTAATGTTATACCAAGATTCAATTTCCCAGCTATTTTCTTGGAAAGGATTATCAAATCAGATCTCCCTGTGAACCTCCAAGCCTTGGCATATAGAGTTGAGAGGAATATTTCAGGAAATCAGAAACTCTCCCTTCCAGAAAATCACTTGGATAAAACTTCTAGTGATATTAATGAGTCATCTGCCCAAAAGATAAATAGTGCTTTGTGTGAAAACAAAGAAGATTTAGTCAACTCAATTCCTGGCACCTTGCCCATGCCTTCCAGTGAGGTGAACATCAATAATTGGGGTGCATTTGGAAAAAGTTGCAGACTTGACAGGCCTTGCATGGTGGATGAAATTCATCTCCGTAGATTTGATGGACTTTTGGAAAATGGAGGTGTTCATCGCTGCGTTTTTGCTAGCATAACAGTTAAAGCTCCTGTTCGTGATGTATGGACTGTAATGTCTTCATATGAGTCTCTTCCTGAGATAGTTCCAAATTTAGCAATCAGTAAGATTTTATCACGAGATAACAATAAAGTCCGCATTCTCCAGGAAGGGTGTAAAGGTCTGCTTTATATGGTGCTTCATGCTCGAGTTGTGCTAGATTTGTGTGAATATCTAGAACAGGAGATCAGTTTCGAACAGGTTGAAGGGGACTTTGACTCATTCCAGGGAAAATGGACTTTCGAGCAACTAGGAAATCATCACACACTGCTAAAGTACTCCCTGGAGTCAAAAATGCGCAAAGACACTTTCCTTTCTGAAGCTATCATGGAAGAGGTCATTTATGAAGATCTCCCATCAAACTTGTGTGCAATAAGAGACTATATCGAGAACAAGACAGCATCAAATATTTTGGAAGCATGTAAGCAGAATACAAATTCAGGGCAACAAACTGTTCCATCTGGCTTTGAAGATGATGACAGCTATTGTTCAGCTGAAGACTTGTCTGATTGCAATGCTCAAAGCTCATCTCAACAAAGACCAAGAGTTCCAGGCTTACAAAGAGATATTGAAGTCCTAAAATCTGAACTTCTGAAATTCATTGCAGAACATGGACAGGAAGGATTTATGCCAATGAGGAAGCAACTTCGTTTGCATGGAAGAGTGGATATTGAGAAGGCTATAAATCGCAAGGGTGGATTCAGAAAGATTGCAACTATAATGAACCTCTCTCTGGCTTACAAACACCGCAAACCAAAGGGTTACTGGGACAATCTTGAAAATTTGCATTATGAGATAAGTAGATTTCAAAGGAGCTGGGGAATGGACCCTTCTTTTATGCCTAGCAGAAGGTCATTTGAACGTGCAGGGCGGTTTGATATAGCACGGGCACTGGAAAAGTGGGGCGGACTTCGTCAGGTTTCTCGCCTCCTCTCCCTCAAGGTGAGGCGGCAACGAAGCAGACAGGGCAAGCTTGCCAAGGATAAGAAAGTTGATGATGATGTAGCATCACCTGATGTAGATCGTGAGATCAAGACACCATCTAGACCCACTGTTTCTCAAGATCCACAAAAATGGCTTACAGAACTAAAACAGTTGGACATAAATTGGGTTGAGTAG
>Glyma08g00580.1 sequence type=predicted peptide gene model=Glyma08g00580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYWHIEARVVLDLQELINSAWDRELHFSMVDGDFKKFEGKWSVKSGTRSSSTNLSYEVNVIPRFNFPAIFLERIIKSDLPVNLQALAYRVERNISGNQKLSLPENHLDKTSSDINESSAQKINSALCENKEDLVNSIPGTLPMPSSEVNINNWGAFGKSCRLDRPCMVDEIHLRRFDGLLENGGVHRCVFASITVKAPVRDVWTVMSSYESLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLCEYLEQEISFEQVEGDFDSFQGKWTFEQLGNHHTLLKYSLESKMRKDTFLSEAIMEEVIYEDLPSNLCAIRDYIENKTASNILEACKQNTNSGQQTVPSGFEDDDSYCSAEDLSDCNAQSSSQQRPRVPGLQRDIEVLKSELLKFIAEHGQEGFMPMRKQLRLHGRVDIEKAINRKGGFRKIATIMNLSLAYKHRKPKGYWDNLENLHYEISRFQRSWGMDPSFMPSRRSFERAGRFDIARALEKWGGLRQVSRLLSLKVRRQRSRQGKLAKDKKVDDDVASPDVDREIKTPSRPTVSQDPQKWLTELKQLDINWVE* >Glyma08g00580.2 sequence type=predicted peptide gene model=Glyma08g00580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATSFFASPHHSLFSLFLPFHDMITTCRTSSTTNLGGAQPLSLRFLSKPAPFLSLSFFFPYHSANNGIAVSSTQCKPRIRCDKEVGNGNNNGIEEDEEAEREVQCEVQVVSWRERRVKAEIPVNADIESVWNALTDYDHLADFIPNLVWSGKIPCPYPGRIWLEQRGFQRSMYWHIEARVVLDLQELINSAWDRELHFSMVDGDFKKFEGKWSVKSGTRSSSTNLSYEVNVIPRFNFPAIFLERIIKSDLPVNLQALAYRVERNISGNQKLSLPENHLDKTSSDINESSAQKINSALCENKEDLVNSIPGTLPMPSSEVNINNWGAFGKSCRLDRPCMVDEIHLRRFDGLLENGGVHRCVFASITVKAPVRDVWTVMSSYESLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLCEYLEQEISFEQVEGDFDSFQGKWTFEQLGNHHTLLKYSLESKMRKDTFLSEAIMEEVIYEDLPSNLCAIRDYIENKTASNILEACKQNTNSGQQTVPSGFEDDDSYCSAEDLSDCNAQSSSQQRPRVPGLQRDIEVLKSELLKFIAEHGQEGFMPMRKQLRLHGRVDIEKAINRKGGFRKIATIMNLSLAYKHRKPKGYWDNLENLHYEISRFQRSWGMDPSFMPSRRSFERAGRFDIARALEKWGGLRQVSRLLSLKVRRQRSRQGKLAKDKKVDDDVASPDVDREIKTPSRPTVSQDPQKWLTELKQLDINWVE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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