Glyma08g00550 - SoyBase

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Report for Sequence Feature Glyma08g00550

Feature Type:	gene_model
Chromosome:	Gm08
Start:	245235
stop:	250460
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g00550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G05270	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF869) \| chr3:1500803-1502926 REVERSE LENGTH=615	SoyBase	E_val: 8.00E-152	ISS
PF05911	PFAM	Plant protein of unknown function (DUF869)	JGI		ISS
UniRef100_G7LFP4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Filament-like plant protein n=1 Tax=Medicago truncatula RepID=G7LFP4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233811F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233811F related cluster n=1 Tax=unknown RepID=UPI000233811F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g00550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g00550

Paralog	Evidence	Comments
Glyma05g32920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g00550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g003200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g00550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g00550

Limit To All Plant Sequences

>Glyma08g00550.1   sequence type=CDS   gene model=Glyma08g00550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCGGAGGAGTTGGCTTTGGCGCAGGAAGTCATCTGAGAAAAGTCCCGGTGAAACGGAGAGTTCTGGTTCAATATCATCTCTTTCAGAAAGATTCTCTGATGAACAGGTATATCCAACCCAAGCTGCTTTTTCTCCTGAAGTCACCTCTAAGGCTGCACCGAATGAAGAAGTTAGTAACCCCAAAAAAAGTAAAGAAGATACGGGTTTGAAGATTCTTACAGACAAATTAGCTGCTGCTCTGCTGACTATTAGTGCAAAAGAAGACTTAGTAAAGCAGCATTCTAAAGTTGCAGAAGAAGCCGTCTCAGGCTGGGAGAAGGCTGAAAATGAAGTGTCATCTTTAAAACAACAGCTTGATGCTGCAAGGCAGAAGAACTCAATTCTCGAAGATCGAGTTGGTCATCTTGATGGGGCACTCAAAGAGTGTATGAGGCAGCTTCGACAAGCTAGAGAACTGCAAGAGCAAAAGATGGTTGAGGCTGTTGTGAATAGTTCTCGTGACTGGGAATCCAAAAAATCTGAACTTGAGAGGAAAGTTGCCGAGTTTGAGGCTCAACTTCAAACAGCTAAAGCAGATGCTGCTGCGTCAATTCATTTTGATCTTCACCAGAGACTAGAGGCTGTGCAGAATGAGAATTCAAGTCTTAAACATGAGCTGCAATCTCGACTAGAGGAACTAGAATTTAGGATAGTCGAGAGGGATTTGAGTTCTCAAGCAGCTGAGACAGCTAGCAAACAACATTTGGAGAGTGTCAAGAAGGTTGCTAAGCTTGAAGCTGAGTGCCGTAGACTGAAAGCCATGACTCGCAAAACATTTTCTGTCAATGATCACAGGTCTGTAACTGCATCTTCAGTTTATGTTGAGTCCTTCACAGATAGCATGTCAGATAGTGGAGATAGGCTACTTGCAGTTGAAAGTGATATGCGTAAATTAGGTGGCTGGGAGATGAATGAATGTGAGCTACGCCGTTTCGATTCGTGCTCATCTTCTTTCGTTATGGAACTTGATCAATTTAAGAACGAAAAGGCTAATGGAAAAAATCATGTGGTCTCTTCAACTGAGATCAATCTCATGGATGATTTCCTTGAGATGGAAAGGCTTGCTACATTGCCAGATAGTGAAAGTGGAAGCAATTTTGTTAGGAAAGAAGTGGCATCAGATCAATCTAATGTTGGTCAGGCTACAATAAAAGCTGAAATAGAAGCTATGATTGAAAAGAATGCTGAATTGGAGAAGAAGCTGGGGAAAATGGAAGCTGAAATGGAAGGTATGATTCAAAAGAATGTTGAACTAGAGAAGAAGCTGAAGAAAATGGAAGCAGGTAAGGTTGAGGTAGACATGGTTTTAACCAAATACCAAATGCAGCTCGAGACATCAGAGAGTCAGATAAGGGAAGCAGAGTTGAAGGTAGCAGAGTTTCAAACTCAGTTAGCTCTTGCAAAAAAATCAAATCAAGAAGCATGTGAAGAACTGAAAGCAACAAAAGCAAAGAAGGAGATAGTTGAGTCTACACTCAAACATACTGAAACTGAGGTTGAAGAACTGATTTCAAAAATTCGTTCTTTGGAGGAAGAGATTCATAAGGAGCGAGCTTTGTCCACTGAGAATTCAATCAAATGCGGAAATTTGGAGGTTGAGCTTTCAAAAATGAAGCACAAAGTTCAAGTTCAGCAAGACACTGAGATAAAACATACGGAAGGTGTTAATCTCGATTTGAAGTTAAAACAGGAAAAGGATCTAGCACTGGCTGCTAGTAGATTTGCTGAGTGCCAGAAGACCATTGCATCTCTTGGACAACAGTTAAAGTCCCTTGCAACTTTGGAAGACTTTCTACTTGATTCAGACAACCCTATGGAGTCAACTTGTGAAGTCACAAAAGGTCACCAAAATGGTGGTGAACATTTGAAACCACATCATAGTGATTTGAGCTTGCCCAAAAAAGATTCTGAGTCACCCGTTTCGTTAAACTCATCAATTACCAATGAGAAAAGCCGTAATGGCTTTGGTAAGTTCATCCCTAGAAGCAAAAGAGGAACTCACTGA

Predicted protein sequences of Glyma08g00550

Limit To All Plant Sequences

>Glyma08g00550.1   sequence type=predicted peptide   gene model=Glyma08g00550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRRSWLWRRKSSEKSPGETESSGSISSLSERFSDEQVYPTQAAFSPEVTSKAAPNEEVSNPKKSKEDTGLKILTDKLAAALLTISAKEDLVKQHSKVAEEAVSGWEKAENEVSSLKQQLDAARQKNSILEDRVGHLDGALKECMRQLRQARELQEQKMVEAVVNSSRDWESKKSELERKVAEFEAQLQTAKADAAASIHFDLHQRLEAVQNENSSLKHELQSRLEELEFRIVERDLSSQAAETASKQHLESVKKVAKLEAECRRLKAMTRKTFSVNDHRSVTASSVYVESFTDSMSDSGDRLLAVESDMRKLGGWEMNECELRRFDSCSSSFVMELDQFKNEKANGKNHVVSSTEINLMDDFLEMERLATLPDSESGSNFVRKEVASDQSNVGQATIKAEIEAMIEKNAELEKKLGKMEAEMEGMIQKNVELEKKLKKMEAGKVEVDMVLTKYQMQLETSESQIREAELKVAEFQTQLALAKKSNQEACEELKATKAKKEIVESTLKHTETEVEELISKIRSLEEEIHKERALSTENSIKCGNLEVELSKMKHKVQVQQDTEIKHTEGVNLDLKLKQEKDLALAASRFAECQKTIASLGQQLKSLATLEDFLLDSDNPMESTCEVTKGHQNGGEHLKPHHSDLSLPKKDSESPVSLNSSITNEKSRNGFGKFIPRSKRGTH*

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