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Report for Sequence Feature Glyma08g00490

Feature Type:gene_model
Chromosome:Gm08
Start:194914
stop:200128
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g00490
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G34240AT Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 3I1 | chr4:16389801-16392633 FORWARD LENGTH=550 SoyBaseE_val: 0ISS
GO:0006081GO-bp Annotation by Michelle Graham. GO Biological Process: cellular aldehyde metabolic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0004028GO-mf Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity SoyBaseN/AISS
GO:0004029GO-mf Annotation by Michelle Graham. GO Molecular Function: aldehyde dehydrogenase (NAD) activity SoyBaseN/AISS
GO:0033721GO-mf Annotation by Michelle Graham. GO Molecular Function: aldehyde dehydrogenase (NADP+) activity SoyBaseN/AISS
KOG2456 KOG Aldehyde dehydrogenase JGI ISS
PTHR11699Panther ALDEHYDE DEHYDROGENASE-RELATED JGI ISS
PTHR11699:SF15Panther 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE JGI ISS
PF00171PFAM Aldehyde dehydrogenase family JGI ISS
UniRef100_I1KNX5UniRef Annotation by Michelle Graham. Best UniRef hit: Aldehyde dehydrogenase n=1 Tax=Glycine max RepID=I1KNX5_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1KNX5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Aldehyde dehydrogenase n=1 Tax=Glycine max RepID=I1KNX5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g00490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g00490 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g002700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g00490
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g00490
>Glyma08g00490.1   sequence type=CDS   gene model=Glyma08g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGCCTCTGCCTTGGGCCGTTTCTTGCTGCTAGTGCCCCAGTTGGTAGAAGAGCCTATGGAGGCCACTTAAGCAGAAAGTGCTTTCAAAAGCAACTTCACTTCCACTCACGTTGTGTTGCTTTCTCTTCATTCATATGTTCTGCAACTATATCAGTGATGCCAGAATTAGAAGAGAAGCAAGTGTTTGATGGAGAGAAGGCTAATTTGCTAGTTAAAGATCTCAGAAAGAGCTTTGATTCAGGCATGACTAAGAGCTATGGATGGAGGGTTTCCCAGTTGGAAGCCATAGCTAAGATGTTAGAAGAGAAAGAGAAGGAAATTACTGAAGCTCTATATAAGGACCTTGGAAAACCTCGACTTGAAGCATTTATAACCGAGATTTCCCAGGCTAAATCCTCATGTAGTGAAGCACTTAAAGAGCTGAAAGAATGGATGAAGCCTGAGAAGGTGAATACTTCAATCACAACATATCCATCATCAGCAGAGATTGTGCCAGAACCACTGGGGGTTGTGTTGGTCATCTCAACATGGAACTTTCCTTTCTTGTTATCAATGGATCCAGTCATTGGAGCCATTTCCGCAGGCAATGCTGTGGTCCTGAAACCATCAGAAATTTCTCCAGCAACATCATCACTGCTTGCAAATTTGATCGAACAATATCTAGACAACTCTACCATAAGAGTTGTTGAAGGGGCTATTCCCGAAACATCTGCACTCCTGGATCAGAAGTGGGATAAGATACTTTATACAGGTAGTGCTAGAGTAGGTCGCATTGTCATGGCTGCTGCTGCAAAGCATCTTACTCCAGTGATTCTGGAACTTGGAGGAAAGTGCCCAGCTGTTGTTGAATCAGATGTCAACTTACAAGTTACTGCAAGGAGGATAATAGCTGGCAAGTGGGCATGCAATAGTGGACAAGCATGCATTTCTGTTGATTATATCATCACAAGAAAAGAGTTTGCCCCAAAGCTGGTAGATGCCTTAAAAGAAGAATTGGAACAATTTTTTGGTAAAGATCCTATGGAGTCAAAAGACATGTCAAGAATTGTGTCTCCAAACCAGTTTGCGCGGCTTGTGAATCTCTTGGATGAGGATAAGGTATCTGACAAAATTGTTTTGGGAGGTCAGAGGGATGAGAAGAAATTAAAAATTGCCCCAACTATCATATTGGGTGTTCCTGAAGATGCTATGATAATGCAAGAGGAGATATTTGGGCCAATAATGCCAATCGTCACTGTAGACAATATAGAAGATTGCTACAGTATAATAAAATCAAAGCCAAAACCTCTTGCTGCATATCTCTTCACAAACAATGAGCAGCTGAAGAAGGATTATGTGGATAAGATATCTTCTGGAGGGATGCTCATCAATGACGCCGTCATCCATGTTGCAACTCGTGGGTTGCCTTTTGGAGGAGTTGAAGAGAGTGGAATGGGTTGTTACCATGGAAAATTCTCTTTTGATAGTTTCAGCCACAGGAAGTCAGTTCTCTATAGAAGTTTTGATGCAGATTCTACCATTAGGTACCCTCCGTATACACCTCAGAAGGAAAAATTATTGAAGGCCCTTATTAGTGGCAATATTGTTCAAATTATTCTTTCTCTTTTGGGGTGGTCTTAA
Predicted protein sequences of Glyma08g00490
>Glyma08g00490.1   sequence type=predicted peptide   gene model=Glyma08g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSLCLGPFLAASAPVGRRAYGGHLSRKCFQKQLHFHSRCVAFSSFICSATISVMPELEEKQVFDGEKANLLVKDLRKSFDSGMTKSYGWRVSQLEAIAKMLEEKEKEITEALYKDLGKPRLEAFITEISQAKSSCSEALKELKEWMKPEKVNTSITTYPSSAEIVPEPLGVVLVISTWNFPFLLSMDPVIGAISAGNAVVLKPSEISPATSSLLANLIEQYLDNSTIRVVEGAIPETSALLDQKWDKILYTGSARVGRIVMAAAAKHLTPVILELGGKCPAVVESDVNLQVTARRIIAGKWACNSGQACISVDYIITRKEFAPKLVDALKEELEQFFGKDPMESKDMSRIVSPNQFARLVNLLDEDKVSDKIVLGGQRDEKKLKIAPTIILGVPEDAMIMQEEIFGPIMPIVTVDNIEDCYSIIKSKPKPLAAYLFTNNEQLKKDYVDKISSGGMLINDAVIHVATRGLPFGGVEESGMGCYHGKFSFDSFSHRKSVLYRSFDADSTIRYPPYTPQKEKLLKALISGNIVQIILSLLGWS*






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