Glyma08g00490 - SoyBase

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Report for Sequence Feature Glyma08g00490

Feature Type:	gene_model
Chromosome:	Gm08
Start:	194914
stop:	200128
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g00490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34240	AT	Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 3I1 \| chr4:16389801-16392633 FORWARD LENGTH=550	SoyBase	E_val: 0	ISS
GO:0006081	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular aldehyde metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0004028	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity	SoyBase	N/A	ISS
GO:0004029	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aldehyde dehydrogenase (NAD) activity	SoyBase	N/A	ISS
GO:0033721	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aldehyde dehydrogenase (NADP+) activity	SoyBase	N/A	ISS
KOG2456	KOG	Aldehyde dehydrogenase	JGI		ISS
PTHR11699	Panther	ALDEHYDE DEHYDROGENASE-RELATED	JGI		ISS
PTHR11699:SF15	Panther	1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE	JGI		ISS
PF00171	PFAM	Aldehyde dehydrogenase family	JGI		ISS
UniRef100_I1KNX5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Aldehyde dehydrogenase n=1 Tax=Glycine max RepID=I1KNX5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KNX5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aldehyde dehydrogenase n=1 Tax=Glycine max RepID=I1KNX5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g00490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g00490 not represented in the dataset	Glyma08g00490 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g00490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g002700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g00490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g00490

Limit To All Plant Sequences

>Glyma08g00490.1   sequence type=CDS   gene model=Glyma08g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGCCTCTGCCTTGGGCCGTTTCTTGCTGCTAGTGCCCCAGTTGGTAGAAGAGCCTATGGAGGCCACTTAAGCAGAAAGTGCTTTCAAAAGCAACTTCACTTCCACTCACGTTGTGTTGCTTTCTCTTCATTCATATGTTCTGCAACTATATCAGTGATGCCAGAATTAGAAGAGAAGCAAGTGTTTGATGGAGAGAAGGCTAATTTGCTAGTTAAAGATCTCAGAAAGAGCTTTGATTCAGGCATGACTAAGAGCTATGGATGGAGGGTTTCCCAGTTGGAAGCCATAGCTAAGATGTTAGAAGAGAAAGAGAAGGAAATTACTGAAGCTCTATATAAGGACCTTGGAAAACCTCGACTTGAAGCATTTATAACCGAGATTTCCCAGGCTAAATCCTCATGTAGTGAAGCACTTAAAGAGCTGAAAGAATGGATGAAGCCTGAGAAGGTGAATACTTCAATCACAACATATCCATCATCAGCAGAGATTGTGCCAGAACCACTGGGGGTTGTGTTGGTCATCTCAACATGGAACTTTCCTTTCTTGTTATCAATGGATCCAGTCATTGGAGCCATTTCCGCAGGCAATGCTGTGGTCCTGAAACCATCAGAAATTTCTCCAGCAACATCATCACTGCTTGCAAATTTGATCGAACAATATCTAGACAACTCTACCATAAGAGTTGTTGAAGGGGCTATTCCCGAAACATCTGCACTCCTGGATCAGAAGTGGGATAAGATACTTTATACAGGTAGTGCTAGAGTAGGTCGCATTGTCATGGCTGCTGCTGCAAAGCATCTTACTCCAGTGATTCTGGAACTTGGAGGAAAGTGCCCAGCTGTTGTTGAATCAGATGTCAACTTACAAGTTACTGCAAGGAGGATAATAGCTGGCAAGTGGGCATGCAATAGTGGACAAGCATGCATTTCTGTTGATTATATCATCACAAGAAAAGAGTTTGCCCCAAAGCTGGTAGATGCCTTAAAAGAAGAATTGGAACAATTTTTTGGTAAAGATCCTATGGAGTCAAAAGACATGTCAAGAATTGTGTCTCCAAACCAGTTTGCGCGGCTTGTGAATCTCTTGGATGAGGATAAGGTATCTGACAAAATTGTTTTGGGAGGTCAGAGGGATGAGAAGAAATTAAAAATTGCCCCAACTATCATATTGGGTGTTCCTGAAGATGCTATGATAATGCAAGAGGAGATATTTGGGCCAATAATGCCAATCGTCACTGTAGACAATATAGAAGATTGCTACAGTATAATAAAATCAAAGCCAAAACCTCTTGCTGCATATCTCTTCACAAACAATGAGCAGCTGAAGAAGGATTATGTGGATAAGATATCTTCTGGAGGGATGCTCATCAATGACGCCGTCATCCATGTTGCAACTCGTGGGTTGCCTTTTGGAGGAGTTGAAGAGAGTGGAATGGGTTGTTACCATGGAAAATTCTCTTTTGATAGTTTCAGCCACAGGAAGTCAGTTCTCTATAGAAGTTTTGATGCAGATTCTACCATTAGGTACCCTCCGTATACACCTCAGAAGGAAAAATTATTGAAGGCCCTTATTAGTGGCAATATTGTTCAAATTATTCTTTCTCTTTTGGGGTGGTCTTAA

Predicted protein sequences of Glyma08g00490

Limit To All Plant Sequences

>Glyma08g00490.1   sequence type=predicted peptide   gene model=Glyma08g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSLCLGPFLAASAPVGRRAYGGHLSRKCFQKQLHFHSRCVAFSSFICSATISVMPELEEKQVFDGEKANLLVKDLRKSFDSGMTKSYGWRVSQLEAIAKMLEEKEKEITEALYKDLGKPRLEAFITEISQAKSSCSEALKELKEWMKPEKVNTSITTYPSSAEIVPEPLGVVLVISTWNFPFLLSMDPVIGAISAGNAVVLKPSEISPATSSLLANLIEQYLDNSTIRVVEGAIPETSALLDQKWDKILYTGSARVGRIVMAAAAKHLTPVILELGGKCPAVVESDVNLQVTARRIIAGKWACNSGQACISVDYIITRKEFAPKLVDALKEELEQFFGKDPMESKDMSRIVSPNQFARLVNLLDEDKVSDKIVLGGQRDEKKLKIAPTIILGVPEDAMIMQEEIFGPIMPIVTVDNIEDCYSIIKSKPKPLAAYLFTNNEQLKKDYVDKISSGGMLINDAVIHVATRGLPFGGVEESGMGCYHGKFSFDSFSHRKSVLYRSFDADSTIRYPPYTPQKEKLLKALISGNIVQIILSLLGWS*

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