Report for Sequence Feature Glyma08g00480
Feature Type: gene_model
Chromosome: Gm08
Start: 189116
stop: 193041
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g00480
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G33490 AT
Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein | chr4:16108781-16110679 REVERSE LENGTH=425
SoyBase E_val: 0 ISS
GO:0006508 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteolysis
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0004190 GO-mf
Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity
SoyBase N/A ISS
KOG1339
KOG
Aspartyl protease
JGI ISS
PTHR13683 Panther
ASPARTYL PROTEASES
JGI ISS
PTHR13683:SF98 Panther
CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED
JGI ISS
PF00026 PFAM
Eukaryotic aspartyl protease
JGI ISS
UniRef100_G7LF14 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Aspartic proteinase Asp1 n=1 Tax=Medicago truncatula RepID=G7LF14_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KNX3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KNX3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g00480
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g00480
Paralog Evidence Comments
Glyma05g32860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g00480 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g002600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g00480
Transcripts of Glyma08g00480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g00480.2 sequence type=transcript gene model=Glyma08g00480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTTGCAGTGTTGGAAGGAGGAAAGGAAGAAGTTTCCAAGAAGCTAACGAAGAGTCTCACAAAAGCTGAACTAACACACTCGTACACTGCTTCCAATTCCACCCTCTCTTCCATTTTTTTTTTCTTTCAACTACTCTGAAGGGTTGTGGATTGTGATATTCTTTACGAGGAAGAAAGGAACCAGAAGTCAAAGCATGAGAAGCAATCCCACTTCCAATGCCGAGGTTCTTCTGTCTTTTCTTCCTTCCTAAACCCAATACAAGGTTGTCACTTTTATTCCCACCAACTAGAGAAGCCAAAGCAATTCCCATGAACAAAACCAACACTTTCAACAAGAATCAAGTATTTTGATTTAAACTCAACCCCTTCACTCTTCTATTTCTTTTGTTCATTCATACATTCAAATAATAAATAAAACAATAAAAGAAACAAGAATTTGGTTGGATAGAGAGAGAGGGAATAAAAAAAGATGAAGATGGGGAAAGTGGTGATGGTGGTTGCAGTGATGGTGTTGTTCAACATGTCTTCTTGTTCTGCTTGGTTTGGTGGTAACAAACACAAAAGTGGAAGGAACTCGATTCTCCCAAGTGAAGCCACGTCATCACGGTCAAGGCTTTTGAACCCTGCTGGCTCCTCTATTGTGCTCCCTCTTTATGGCAACGTTTATCCTGTTGGGTTCTATAATGTTACTCTTAATATCGGTCAGCCAGCAAGGCCTTATTTTCTTGATGTGGACACGGGTAGTGATCTCACATGGCTCCAATGTGATGCCCCTTGTACTCATTGCTCTGAGACACCCCATCCACTCTACAGGCCCAGCAATGACTTTGTACCCTGCAGGGATCCCCTTTGTGCATCCTTGCAGCCAACTGAGGACTACAACTGTGAACACCCTGATCAATGTGACTATGAAATTAATTATGCAGATCAGTACTCGACCTTTGGCGTGCTTCTCAATGATGTCTACCTTCTCAACTTCACCAATGGAGTCCAACTTAAAGTTCGGATGGCACTCGGATGTGGATATGATCAAGTATTTTCTCCTTCTTCTTACCATCCCTTAGATGGATTACTTGGCCTTGGAAGGGGAAAGGCCAGCTTGATATCCCAGTTGAATAGTCAGGGCTTGGTACGAAATGTGATTGGACATTGTTTGAGTGCACAAGGAGGAGGGTATATCTTCTTTGGGAATGCATATGATTCTGCTCGAGTGACTTGGACTCCAATTTCATCTGTAGATTCAAAACATTACTCTGCAGGGCCAGCTGAACTTGTTTTTGGAGGAAGGAAAACTGGGGTTGGAAGTCTGACTGCTGTTTTTGACACTGGAAGTTCTTACACTTACTTCAATTCTCATGCTTACCAAGCACTACTTTCTTGGCTGAAGAAGGAATTAAGTGGAAAGCCCTTAAAAGTAGCACCTGATGATCAGACTTTACCTCTCTGCTGGCACGGTAAAAGACCTTTCACAAGCCTACGTGAAGTCAGGAAATACTTCAAGCCTGTGGCACTTGGTTTCACCAATGGTGGAAGAACTAAAGCCCAATTTGAGATCCTTCCTGAAGCTTATCTGATAATATCTGTGAGTTCTACACTCTAACCTATCAATATCTTCTATGTTTGTTGACATTTTTTGCTGCTATCATATTTAATGGATGCATTTCATGTCTGAATGCCAACAAACTGTACGTTCTTGCCAGAACCTGGGAAATGTTTGTCTGGGCATTCTAAATGGCTCTGAAGTAGGGTTGGAGGAACTGAATCTAATTGGAGACATATCCATGCAAGACAAAGTGATGGTGTTTGAAAATGAGAAGCAGTTGATTGGTTGGGGACCTGCAGATTGCAGCCGTATTCCAAAATCCGGAGATGTCAGTATTTGATCATAAAATATGCATAGTTCAGGCATGCATAAGGACGGTATCATTATGCATGTTGTCCTGCAGTTTATAGAGCAGGGTGATAGTACTATTGAATACCAATTTATGTTTACTTGTGATTTGTGAATACAGTCTTGTGTATACTACTATTACTATATCAGTATATTGGAACAGGTATAGAGGTCCATCAAGATAAGGATAAAGGGTATTTATTGTTGTATTGGTGTTACATTCTAATTACCGAGTTGTGATTCAAAGGGTAAAGTCAATGTAAGTTGATGCAGTATTGGATATACATCAAATATTCTGTATTTAGCTGGCAGATCTCATGCATCTTCCTTCTCAGTTTTCAACGATCTCAAAACTATCCAAGTTTGACTGCAGAAAAACTAAGTTGCAGTTCTTTAAGT
Coding sequences of Glyma08g00480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g00480.1 sequence type=CDS gene model=Glyma08g00480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGATGGGGAAAGTGGTGATGGTGGTTGCAGTGATGGTGTTGTTCAACATGTCTTCTTGTTCTGCTTGGTTTGGTGGTAACAAACACAAAAGTGGAAGGAACTCGATTCTCCCAAGTGAAGCCACGTCATCACGGTCAAGGCTTTTGAACCCTGCTGGCTCCTCTATTGTGCTCCCTCTTTATGGCAACGTTTATCCTGTTGGGTTCTATAATGTTACTCTTAATATCGGTCAGCCAGCAAGGCCTTATTTTCTTGATGTGGACACGGGTAGTGATCTCACATGGCTCCAATGTGATGCCCCTTGTACTCATTGCTCTGAGACACCCCATCCACTCTACAGGCCCAGCAATGACTTTGTACCCTGCAGGGATCCCCTTTGTGCATCCTTGCAGCCAACTGAGGACTACAACTGTGAACACCCTGATCAATGTGACTATGAAATTAATTATGCAGATCAGTACTCGACCTTTGGCGTGCTTCTCAATGATGTCTACCTTCTCAACTTCACCAATGGAGTCCAACTTAAAGTTCGGATGGCACTCGGATGTGGATATGATCAAGTATTTTCTCCTTCTTCTTACCATCCCTTAGATGGATTACTTGGCCTTGGAAGGGGAAAGGCCAGCTTGATATCCCAGTTGAATAGTCAGGGCTTGGTACGAAATGTGATTGGACATTGTTTGAGTGCACAAGGAGGAGGGTATATCTTCTTTGGGAATGCATATGATTCTGCTCGAGTGACTTGGACTCCAATTTCATCTGTAGATTCAAAACATTACTCTGCAGGGCCAGCTGAACTTGTTTTTGGAGGAAGGAAAACTGGGGTTGGAAGTCTGACTGCTGTTTTTGACACTGGAAGTTCTTACACTTACTTCAATTCTCATGCTTACCAAGCACTACTTTCTTGGCTGAAGAAGGAATTAAGTGGAAAGCCCTTAAAAGTAGCACCTGATGATCAGACTTTACCTCTCTGCTGGCACGGTAAAAGACCTTTCACAAGCCTACGTGAAGTCAGGAAATACTTCAAGCCTGTGGCACTTGGTTTCACCAATGGTGGAAGAACTAAAGCCCAATTTGAGATCCTTCCTGAAGCTTATCTGATAATATCTAACCTGGGAAATGTTTGTCTGGGCATTCTAAATGGCTCTGAAGTAGGGTTGGAGGAACTGAATCTAATTGGAGACATATCCATGCAAGACAAAGTGATGGTGTTTGAAAATGAGAAGCAGTTGATTGGTTGGGGACCTGCAGATTGCAGCCGTATTCCAAAATCCGGAGATGTCAGTATTTGA
>Glyma08g00480.2 sequence type=CDS gene model=Glyma08g00480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGATGGGGAAAGTGGTGATGGTGGTTGCAGTGATGGTGTTGTTCAACATGTCTTCTTGTTCTGCTTGGTTTGGTGGTAACAAACACAAAAGTGGAAGGAACTCGATTCTCCCAAGTGAAGCCACGTCATCACGGTCAAGGCTTTTGAACCCTGCTGGCTCCTCTATTGTGCTCCCTCTTTATGGCAACGTTTATCCTGTTGGGTTCTATAATGTTACTCTTAATATCGGTCAGCCAGCAAGGCCTTATTTTCTTGATGTGGACACGGGTAGTGATCTCACATGGCTCCAATGTGATGCCCCTTGTACTCATTGCTCTGAGACACCCCATCCACTCTACAGGCCCAGCAATGACTTTGTACCCTGCAGGGATCCCCTTTGTGCATCCTTGCAGCCAACTGAGGACTACAACTGTGAACACCCTGATCAATGTGACTATGAAATTAATTATGCAGATCAGTACTCGACCTTTGGCGTGCTTCTCAATGATGTCTACCTTCTCAACTTCACCAATGGAGTCCAACTTAAAGTTCGGATGGCACTCGGATGTGGATATGATCAAGTATTTTCTCCTTCTTCTTACCATCCCTTAGATGGATTACTTGGCCTTGGAAGGGGAAAGGCCAGCTTGATATCCCAGTTGAATAGTCAGGGCTTGGTACGAAATGTGATTGGACATTGTTTGAGTGCACAAGGAGGAGGGTATATCTTCTTTGGGAATGCATATGATTCTGCTCGAGTGACTTGGACTCCAATTTCATCTGTAGATTCAAAACATTACTCTGCAGGGCCAGCTGAACTTGTTTTTGGAGGAAGGAAAACTGGGGTTGGAAGTCTGACTGCTGTTTTTGACACTGGAAGTTCTTACACTTACTTCAATTCTCATGCTTACCAAGCACTACTTTCTTGGCTGAAGAAGGAATTAAGTGGAAAGCCCTTAAAAGTAGCACCTGATGATCAGACTTTACCTCTCTGCTGGCACGGTAAAAGACCTTTCACAAGCCTACGTGAAGTCAGGAAATACTTCAAGCCTGTGGCACTTGGTTTCACCAATGGTGGAAGAACTAAAGCCCAATTTGAGATCCTTCCTGAAGCTTATCTGATAATATCTGTGAGTTCTACACTCTAA
Predicted protein sequences of Glyma08g00480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g00480.1 sequence type=predicted peptide gene model=Glyma08g00480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKMGKVVMVVAVMVLFNMSSCSAWFGGNKHKSGRNSILPSEATSSRSRLLNPAGSSIVLPLYGNVYPVGFYNVTLNIGQPARPYFLDVDTGSDLTWLQCDAPCTHCSETPHPLYRPSNDFVPCRDPLCASLQPTEDYNCEHPDQCDYEINYADQYSTFGVLLNDVYLLNFTNGVQLKVRMALGCGYDQVFSPSSYHPLDGLLGLGRGKASLISQLNSQGLVRNVIGHCLSAQGGGYIFFGNAYDSARVTWTPISSVDSKHYSAGPAELVFGGRKTGVGSLTAVFDTGSSYTYFNSHAYQALLSWLKKELSGKPLKVAPDDQTLPLCWHGKRPFTSLREVRKYFKPVALGFTNGGRTKAQFEILPEAYLIISNLGNVCLGILNGSEVGLEELNLIGDISMQDKVMVFENEKQLIGWGPADCSRIPKSGDVSI*
>Glyma08g00480.2 sequence type=predicted peptide gene model=Glyma08g00480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKMGKVVMVVAVMVLFNMSSCSAWFGGNKHKSGRNSILPSEATSSRSRLLNPAGSSIVLPLYGNVYPVGFYNVTLNIGQPARPYFLDVDTGSDLTWLQCDAPCTHCSETPHPLYRPSNDFVPCRDPLCASLQPTEDYNCEHPDQCDYEINYADQYSTFGVLLNDVYLLNFTNGVQLKVRMALGCGYDQVFSPSSYHPLDGLLGLGRGKASLISQLNSQGLVRNVIGHCLSAQGGGYIFFGNAYDSARVTWTPISSVDSKHYSAGPAELVFGGRKTGVGSLTAVFDTGSSYTYFNSHAYQALLSWLKKELSGKPLKVAPDDQTLPLCWHGKRPFTSLREVRKYFKPVALGFTNGGRTKAQFEILPEAYLIISVSSTL*