Glyma08g00480 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g00480

Feature Type:	gene_model
Chromosome:	Gm08
Start:	189116
stop:	193041
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g00480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33490	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein \| chr4:16108781-16110679 REVERSE LENGTH=425	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
KOG1339	KOG	Aspartyl protease	JGI		ISS
PTHR13683	Panther	ASPARTYL PROTEASES	JGI		ISS
PTHR13683:SF98	Panther	CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED	JGI		ISS
PF00026	PFAM	Eukaryotic aspartyl protease	JGI		ISS
UniRef100_G7LF14	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aspartic proteinase Asp1 n=1 Tax=Medicago truncatula RepID=G7LF14_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KNX3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KNX3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g00480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g00480

Paralog	Evidence	Comments
Glyma05g32860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g00480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g002600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g00480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g00480

Limit To All Plant Sequences

>Glyma08g00480.2   sequence type=transcript   gene model=Glyma08g00480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGCAGTGTTGGAAGGAGGAAAGGAAGAAGTTTCCAAGAAGCTAACGAAGAGTCTCACAAAAGCTGAACTAACACACTCGTACACTGCTTCCAATTCCACCCTCTCTTCCATTTTTTTTTTCTTTCAACTACTCTGAAGGGTTGTGGATTGTGATATTCTTTACGAGGAAGAAAGGAACCAGAAGTCAAAGCATGAGAAGCAATCCCACTTCCAATGCCGAGGTTCTTCTGTCTTTTCTTCCTTCCTAAACCCAATACAAGGTTGTCACTTTTATTCCCACCAACTAGAGAAGCCAAAGCAATTCCCATGAACAAAACCAACACTTTCAACAAGAATCAAGTATTTTGATTTAAACTCAACCCCTTCACTCTTCTATTTCTTTTGTTCATTCATACATTCAAATAATAAATAAAACAATAAAAGAAACAAGAATTTGGTTGGATAGAGAGAGAGGGAATAAAAAAAGATGAAGATGGGGAAAGTGGTGATGGTGGTTGCAGTGATGGTGTTGTTCAACATGTCTTCTTGTTCTGCTTGGTTTGGTGGTAACAAACACAAAAGTGGAAGGAACTCGATTCTCCCAAGTGAAGCCACGTCATCACGGTCAAGGCTTTTGAACCCTGCTGGCTCCTCTATTGTGCTCCCTCTTTATGGCAACGTTTATCCTGTTGGGTTCTATAATGTTACTCTTAATATCGGTCAGCCAGCAAGGCCTTATTTTCTTGATGTGGACACGGGTAGTGATCTCACATGGCTCCAATGTGATGCCCCTTGTACTCATTGCTCTGAGACACCCCATCCACTCTACAGGCCCAGCAATGACTTTGTACCCTGCAGGGATCCCCTTTGTGCATCCTTGCAGCCAACTGAGGACTACAACTGTGAACACCCTGATCAATGTGACTATGAAATTAATTATGCAGATCAGTACTCGACCTTTGGCGTGCTTCTCAATGATGTCTACCTTCTCAACTTCACCAATGGAGTCCAACTTAAAGTTCGGATGGCACTCGGATGTGGATATGATCAAGTATTTTCTCCTTCTTCTTACCATCCCTTAGATGGATTACTTGGCCTTGGAAGGGGAAAGGCCAGCTTGATATCCCAGTTGAATAGTCAGGGCTTGGTACGAAATGTGATTGGACATTGTTTGAGTGCACAAGGAGGAGGGTATATCTTCTTTGGGAATGCATATGATTCTGCTCGAGTGACTTGGACTCCAATTTCATCTGTAGATTCAAAACATTACTCTGCAGGGCCAGCTGAACTTGTTTTTGGAGGAAGGAAAACTGGGGTTGGAAGTCTGACTGCTGTTTTTGACACTGGAAGTTCTTACACTTACTTCAATTCTCATGCTTACCAAGCACTACTTTCTTGGCTGAAGAAGGAATTAAGTGGAAAGCCCTTAAAAGTAGCACCTGATGATCAGACTTTACCTCTCTGCTGGCACGGTAAAAGACCTTTCACAAGCCTACGTGAAGTCAGGAAATACTTCAAGCCTGTGGCACTTGGTTTCACCAATGGTGGAAGAACTAAAGCCCAATTTGAGATCCTTCCTGAAGCTTATCTGATAATATCTGTGAGTTCTACACTCTAACCTATCAATATCTTCTATGTTTGTTGACATTTTTTGCTGCTATCATATTTAATGGATGCATTTCATGTCTGAATGCCAACAAACTGTACGTTCTTGCCAGAACCTGGGAAATGTTTGTCTGGGCATTCTAAATGGCTCTGAAGTAGGGTTGGAGGAACTGAATCTAATTGGAGACATATCCATGCAAGACAAAGTGATGGTGTTTGAAAATGAGAAGCAGTTGATTGGTTGGGGACCTGCAGATTGCAGCCGTATTCCAAAATCCGGAGATGTCAGTATTTGATCATAAAATATGCATAGTTCAGGCATGCATAAGGACGGTATCATTATGCATGTTGTCCTGCAGTTTATAGAGCAGGGTGATAGTACTATTGAATACCAATTTATGTTTACTTGTGATTTGTGAATACAGTCTTGTGTATACTACTATTACTATATCAGTATATTGGAACAGGTATAGAGGTCCATCAAGATAAGGATAAAGGGTATTTATTGTTGTATTGGTGTTACATTCTAATTACCGAGTTGTGATTCAAAGGGTAAAGTCAATGTAAGTTGATGCAGTATTGGATATACATCAAATATTCTGTATTTAGCTGGCAGATCTCATGCATCTTCCTTCTCAGTTTTCAACGATCTCAAAACTATCCAAGTTTGACTGCAGAAAAACTAAGTTGCAGTTCTTTAAGT

Coding sequences of Glyma08g00480

Limit To All Plant Sequences

>Glyma08g00480.1   sequence type=CDS   gene model=Glyma08g00480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATGGGGAAAGTGGTGATGGTGGTTGCAGTGATGGTGTTGTTCAACATGTCTTCTTGTTCTGCTTGGTTTGGTGGTAACAAACACAAAAGTGGAAGGAACTCGATTCTCCCAAGTGAAGCCACGTCATCACGGTCAAGGCTTTTGAACCCTGCTGGCTCCTCTATTGTGCTCCCTCTTTATGGCAACGTTTATCCTGTTGGGTTCTATAATGTTACTCTTAATATCGGTCAGCCAGCAAGGCCTTATTTTCTTGATGTGGACACGGGTAGTGATCTCACATGGCTCCAATGTGATGCCCCTTGTACTCATTGCTCTGAGACACCCCATCCACTCTACAGGCCCAGCAATGACTTTGTACCCTGCAGGGATCCCCTTTGTGCATCCTTGCAGCCAACTGAGGACTACAACTGTGAACACCCTGATCAATGTGACTATGAAATTAATTATGCAGATCAGTACTCGACCTTTGGCGTGCTTCTCAATGATGTCTACCTTCTCAACTTCACCAATGGAGTCCAACTTAAAGTTCGGATGGCACTCGGATGTGGATATGATCAAGTATTTTCTCCTTCTTCTTACCATCCCTTAGATGGATTACTTGGCCTTGGAAGGGGAAAGGCCAGCTTGATATCCCAGTTGAATAGTCAGGGCTTGGTACGAAATGTGATTGGACATTGTTTGAGTGCACAAGGAGGAGGGTATATCTTCTTTGGGAATGCATATGATTCTGCTCGAGTGACTTGGACTCCAATTTCATCTGTAGATTCAAAACATTACTCTGCAGGGCCAGCTGAACTTGTTTTTGGAGGAAGGAAAACTGGGGTTGGAAGTCTGACTGCTGTTTTTGACACTGGAAGTTCTTACACTTACTTCAATTCTCATGCTTACCAAGCACTACTTTCTTGGCTGAAGAAGGAATTAAGTGGAAAGCCCTTAAAAGTAGCACCTGATGATCAGACTTTACCTCTCTGCTGGCACGGTAAAAGACCTTTCACAAGCCTACGTGAAGTCAGGAAATACTTCAAGCCTGTGGCACTTGGTTTCACCAATGGTGGAAGAACTAAAGCCCAATTTGAGATCCTTCCTGAAGCTTATCTGATAATATCTAACCTGGGAAATGTTTGTCTGGGCATTCTAAATGGCTCTGAAGTAGGGTTGGAGGAACTGAATCTAATTGGAGACATATCCATGCAAGACAAAGTGATGGTGTTTGAAAATGAGAAGCAGTTGATTGGTTGGGGACCTGCAGATTGCAGCCGTATTCCAAAATCCGGAGATGTCAGTATTTGA

>Glyma08g00480.2   sequence type=CDS   gene model=Glyma08g00480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATGGGGAAAGTGGTGATGGTGGTTGCAGTGATGGTGTTGTTCAACATGTCTTCTTGTTCTGCTTGGTTTGGTGGTAACAAACACAAAAGTGGAAGGAACTCGATTCTCCCAAGTGAAGCCACGTCATCACGGTCAAGGCTTTTGAACCCTGCTGGCTCCTCTATTGTGCTCCCTCTTTATGGCAACGTTTATCCTGTTGGGTTCTATAATGTTACTCTTAATATCGGTCAGCCAGCAAGGCCTTATTTTCTTGATGTGGACACGGGTAGTGATCTCACATGGCTCCAATGTGATGCCCCTTGTACTCATTGCTCTGAGACACCCCATCCACTCTACAGGCCCAGCAATGACTTTGTACCCTGCAGGGATCCCCTTTGTGCATCCTTGCAGCCAACTGAGGACTACAACTGTGAACACCCTGATCAATGTGACTATGAAATTAATTATGCAGATCAGTACTCGACCTTTGGCGTGCTTCTCAATGATGTCTACCTTCTCAACTTCACCAATGGAGTCCAACTTAAAGTTCGGATGGCACTCGGATGTGGATATGATCAAGTATTTTCTCCTTCTTCTTACCATCCCTTAGATGGATTACTTGGCCTTGGAAGGGGAAAGGCCAGCTTGATATCCCAGTTGAATAGTCAGGGCTTGGTACGAAATGTGATTGGACATTGTTTGAGTGCACAAGGAGGAGGGTATATCTTCTTTGGGAATGCATATGATTCTGCTCGAGTGACTTGGACTCCAATTTCATCTGTAGATTCAAAACATTACTCTGCAGGGCCAGCTGAACTTGTTTTTGGAGGAAGGAAAACTGGGGTTGGAAGTCTGACTGCTGTTTTTGACACTGGAAGTTCTTACACTTACTTCAATTCTCATGCTTACCAAGCACTACTTTCTTGGCTGAAGAAGGAATTAAGTGGAAAGCCCTTAAAAGTAGCACCTGATGATCAGACTTTACCTCTCTGCTGGCACGGTAAAAGACCTTTCACAAGCCTACGTGAAGTCAGGAAATACTTCAAGCCTGTGGCACTTGGTTTCACCAATGGTGGAAGAACTAAAGCCCAATTTGAGATCCTTCCTGAAGCTTATCTGATAATATCTGTGAGTTCTACACTCTAA

Predicted protein sequences of Glyma08g00480

Limit To All Plant Sequences

>Glyma08g00480.1   sequence type=predicted peptide   gene model=Glyma08g00480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMGKVVMVVAVMVLFNMSSCSAWFGGNKHKSGRNSILPSEATSSRSRLLNPAGSSIVLPLYGNVYPVGFYNVTLNIGQPARPYFLDVDTGSDLTWLQCDAPCTHCSETPHPLYRPSNDFVPCRDPLCASLQPTEDYNCEHPDQCDYEINYADQYSTFGVLLNDVYLLNFTNGVQLKVRMALGCGYDQVFSPSSYHPLDGLLGLGRGKASLISQLNSQGLVRNVIGHCLSAQGGGYIFFGNAYDSARVTWTPISSVDSKHYSAGPAELVFGGRKTGVGSLTAVFDTGSSYTYFNSHAYQALLSWLKKELSGKPLKVAPDDQTLPLCWHGKRPFTSLREVRKYFKPVALGFTNGGRTKAQFEILPEAYLIISNLGNVCLGILNGSEVGLEELNLIGDISMQDKVMVFENEKQLIGWGPADCSRIPKSGDVSI*

>Glyma08g00480.2   sequence type=predicted peptide   gene model=Glyma08g00480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMGKVVMVVAVMVLFNMSSCSAWFGGNKHKSGRNSILPSEATSSRSRLLNPAGSSIVLPLYGNVYPVGFYNVTLNIGQPARPYFLDVDTGSDLTWLQCDAPCTHCSETPHPLYRPSNDFVPCRDPLCASLQPTEDYNCEHPDQCDYEINYADQYSTFGVLLNDVYLLNFTNGVQLKVRMALGCGYDQVFSPSSYHPLDGLLGLGRGKASLISQLNSQGLVRNVIGHCLSAQGGGYIFFGNAYDSARVTWTPISSVDSKHYSAGPAELVFGGRKTGVGSLTAVFDTGSSYTYFNSHAYQALLSWLKKELSGKPLKVAPDDQTLPLCWHGKRPFTSLREVRKYFKPVALGFTNGGRTKAQFEILPEAYLIISVSSTL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain