Report for Sequence Feature Glyma08g00440
Feature Type: gene_model
Chromosome: Gm08
Start: 150063
stop: 156497
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g00440
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G63860 AT
Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family protein | chr5:25554821-25558587 REVERSE LENGTH=440
SoyBase E_val: 4.00E-132 ISS
GO:0006007 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucose catabolic process
SoyBase N/A ISS
GO:0009411 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to UV
SoyBase N/A ISS
GO:0009649 GO-bp
Annotation by Michelle Graham. GO Biological Process: entrainment of circadian clock
SoyBase N/A ISS
GO:0010224 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to UV-B
SoyBase N/A ISS
GO:0000785 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chromatin
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003682 GO-mf
Annotation by Michelle Graham. GO Molecular Function: chromatin binding
SoyBase N/A ISS
GO:0005085 GO-mf
Annotation by Michelle Graham. GO Molecular Function: guanyl-nucleotide exchange factor activity
SoyBase N/A ISS
PTHR22870 Panther
REGULATOR OF CHROMOSOME CONDENSATION
JGI ISS
PTHR22870:SF27 Panther
UVB-RESISTANCE PROTEIN UVR8
JGI ISS
PF00415 PFAM
Regulator of chromosome condensation (RCC1) repeat
JGI ISS
UniRef100_G8A1N5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RCC1 and BTB domain-containing protein n=1 Tax=Medicago truncatula RepID=G8A1N5_MEDTR
SoyBase E_val: 5.00E-139 ISS
UniRef100_I1K517 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K517_SOYBN
SoyBase E_val: 4.00E-171 ISS
Expression Patterns of Glyma08g00440
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g00440
Paralog Evidence Comments
Glyma05g32790 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g00440 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g002200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g00440
Coding sequences of Glyma08g00440
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g00440.2 sequence type=CDS gene model=Glyma08g00440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGAAAGAGTCGCCGAGACGAAGAATCAAAAATATAACTGGAAATGTTGTTTGCTCGTGGGGGCGAGTAGAGGATGGACAGTTAGGCCATGGTGACACTGATGATCGACTTTTGCCTACAAAACTGAGTGCATTGGATGGCCAAGACATAATATGTGTTACTTGTGGAGCTGATCATACTATGGCACGTTCTGAGTCTGGCAGGGATGGACGTAATCAAAATGGTGAACTTGGACTTGGAACCACAGAGGACTCTCTTCTGCCACAAAAAATTCAAAAATTTGAGGGAATACCTATCAAAATGGTTGCTGCCGGTGCTGAACATAGTGTAGCAATCACTGAAGATGGGAATTTGTATGGATGGGGTTGGGGCCGATATGGAAACTTGGGATTGGATGGTAGAAAGTACGTCATCCTAAACTTGCTTGGTGACAAGATGGCCATGGTTGCTTGTGGCTGGCGGCATACAAGATGTGTTTCATCTTCTGGTGGATTATACACAACTGGATGGGGCAAATACGGCCAGCTAGGACATGGGAATTTTGAGGATCATCTTGTGCCTCGCAAGGTTCAAGCCTTGAGTGACAAGTTCATTTCGCAGGACTTCTTTCTGGTATCAGGTGGGTGGAGGCATAGTATGGCACTCACGTCTAATTATTGCTCTCCCATGCAAGTGAACTTTCCCCATGATCAGAAAGTACGTCAGATCTCATGCGGGTGGAGACACACGATTGCTGTTACTGAACGTGAGAATGTATATTCTTGGGGAAGAGGAGCAAATGGACAACTTTGGAATGGAGAAACCATAGACCCCAATGTTCCAATGATTATTAAGGCCTTCAGTGTTGATGGATCTTCCGGGCAGCACATAGAATCCTCAAAACCTTATCCAACATCAGGGAAATCCTTGTCCTCCATATCAAAGAGATATGCAATTGCTCCAGATGAAACTGCCTCAGGATCACAGCCTACTAATTCAGAAGGGGGAGATAGGCATGATACCAGTGTCCCTTAA
Predicted protein sequences of Glyma08g00440
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g00440.2 sequence type=predicted peptide gene model=Glyma08g00440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLKESPRRRIKNITGNVVCSWGRVEDGQLGHGDTDDRLLPTKLSALDGQDIICVTCGADHTMARSESGRDGRNQNGELGLGTTEDSLLPQKIQKFEGIPIKMVAAGAEHSVAITEDGNLYGWGWGRYGNLGLDGRKYVILNLLGDKMAMVACGWRHTRCVSSSGGLYTTGWGKYGQLGHGNFEDHLVPRKVQALSDKFISQDFFLVSGGWRHSMALTSNYCSPMQVNFPHDQKVRQISCGWRHTIAVTERENVYSWGRGANGQLWNGETIDPNVPMIIKAFSVDGSSGQHIESSKPYPTSGKSLSSISKRYAIAPDETASGSQPTNSEGGDRHDTSVP*