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Report for Sequence Feature Glyma08g00340

Feature Type:gene_model
Chromosome:Gm08
Start:98997
stop:99179
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g00340
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20110AT Annotation by Michelle Graham. TAIR10: Dynein light chain type 1 family protein | chr5:6791542-6793253 REVERSE LENGTH=209 SoyBaseE_val: 3.00E-27ISS
GO:0007017GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule-based process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005875GO-cc Annotation by Michelle Graham. GO Cellular Compartment: microtubule associated complex SoyBaseN/AISS
GO:0003777GO-mf Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity SoyBaseN/AISS
PTHR11886Panther DYNEIN LIGHT CHAIN JGI ISS
PTHR11886:SF9Panther CYTOPLASMIC DYNEIN LIGHT CHAIN JGI ISS
PF01221PFAM Dynein light chain type 1 JGI ISS
UniRef100_G7JVC8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Dynein light chain n=1 Tax=Medicago truncatula RepID=G7JVC8_MEDTR SoyBaseE_val: 4.00E-27ISS
UniRef100_I1KNW0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KNW0_SOYBN SoyBaseE_val: 7.00E-37ISS

Expression Patterns of Glyma08g00340
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g00340 not represented in the dataset
Glyma08g00340 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g00340 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma08g00340
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g00340
>Glyma08g00340.1   sequence type=CDS   gene model=Glyma08g00340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTCCTGGTATGTTCATGTGCAGGAATTTGACAAAGCGTATGGTCCGGTCTGGCATTGCATTGTAGGCTCAAATTTTGGCTCATTTGTGACACATTCAACGGGGTGTTTTCTTTATTTTTCAATGGAAAATTTATATATACTACTGTTCAAGACCAAAGTTAAGAAGGCGTTGGATTAA
Predicted protein sequences of Glyma08g00340
>Glyma08g00340.1   sequence type=predicted peptide   gene model=Glyma08g00340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYSWYVHVQEFDKAYGPVWHCIVGSNFGSFVTHSTGCFLYFSMENLYILLFKTKVKKALD*






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