Glyma08G19060 - SoyBase

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Report for Sequence Feature Glyma08G19060

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14376346
stop:	14379718
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08G19060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09430	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr5:2932162-2933362 FORWARD LENGTH=311	SoyBase	E_val: 2.00E-158	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1454	KOG	Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily)	JGI		ISS
PTHR10992	Panther	ALPHA/BETA HYDROLASE RELATED	JGI		ISS
PTHR10992:SF163	Panther	HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN	JGI		ISS
PF00561	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_B9SIP5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Abhydrolase domain containing, putative n=1 Tax=Ricinus communis RepID=B9SIP5_RICCO	SoyBase	E_val: 8.00E-168	ISS
UniRef100_I1KUC7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KUC7_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma08G19060

Locus	Gene Symbol	Protein Name
	MAGL	Monoacylglycerol lipase

Expression Patterns of Glyma08G19060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08G19060

Paralog	Evidence	Comments
Glyma15g05930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08G19060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g178600	Wm82.a2.v1	IGC	As supplied by JGI
Glyma08g19060	Wm82.a1.v1.1	IGC	Correspondences based on a combination of genome sequence coordinate overlap (fjoin) and sequence similarity (ungapped blastn)

References for Glyma08G19060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08G19060

Limit To All Plant Sequences

>Glyma08g19060.1   sequence type=CDS   gene model=Glyma08g19060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCCGAAACTCTCAAAATGCATCAGCTTCACCGCTTCGCGGGACTGGCTGTACCGTCATTTGTTCGCCGCCGCGGGGCTCCGCTCGGTGGCCACCGACCTCGGCGAAGGAACCATCGTGCATTGCTGGGTACCCAAAATGCACAAGCCATGCAAGCCAAGCCTCGTACTCATTCACGGTTTCGGCGCCAACGCCATGTGGCAATACGGGGAACACATTCGTCTCTTCATGGGGCACTTCAACGTGTACGTGCCGGACCTCGTGTTCTTCGGCGAGTCCTTCACGTTAAGGGCTGAGAGGAGCGAGTACTTTCAGGCTGAGTGCATGGTGAAGATGATGGAGGCTCATGGGGTTCACAAAATGAGCTTGGTGGGGATCAGCTATGGTGGGTTTGTAGGGTACCGTGTGGCTGCTCACTTCCCTGACGTGGTGGAGAAGATTGTTCTTTGTTGTGCTGGGGTTTGCTTGGAGGAGGTTGACATGGAAAATGGGTTGTTTAGGGTTTCAAATTTGGATGAGGCTTCCAGCATTTTGTTGCCACAGACACCGGACAAGCTCAGGGAATTGATGAAGTTGTCCTTTGTCAGGCCTGCCAGGGGTGTTCCTACTTGGTTCCTTCAAGATTTCATTCAAGTGATGTGTACAGACTACATTGAACAGAAGAGAGAATTGCTTGAGGCAATACTAAAAGGTCGGCATCTTTCCGATCTTCCTAAAATCCAACAGCCCACTCTAATTTTATGGGGAGAGCAAGATCAGATATTCCCTCTGGAGTTAGGACACAGATTAAAAAGGCATATAGGGGAAAATGCTCAAATGGCAGTCATCAAGAATGCAGGGCATGCAGTGAACCTAGAAAAGGCCAAAGAGTTTGGCAAGCACTTGAAAGCATTCCTTATAGATTCTAATACTACAAAGTCATGTCCAACCTCACCACTTTCTTCTAGGCAGAACTTTCGTTTTTGA

Predicted protein sequences of Glyma08G19060

Limit To All Plant Sequences

>Glyma08g19060.1   sequence type=predicted peptide   gene model=Glyma08g19060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPKLSKCISFTASRDWLYRHLFAAAGLRSVATDLGEGTIVHCWVPKMHKPCKPSLVLIHGFGANAMWQYGEHIRLFMGHFNVYVPDLVFFGESFTLRAERSEYFQAECMVKMMEAHGVHKMSLVGISYGGFVGYRVAAHFPDVVEKIVLCCAGVCLEEVDMENGLFRVSNLDEASSILLPQTPDKLRELMKLSFVRPARGVPTWFLQDFIQVMCTDYIEQKRELLEAILKGRHLSDLPKIQQPTLILWGEQDQIFPLELGHRLKRHIGENAQMAVIKNAGHAVNLEKAKEFGKHLKAFLIDSNTTKSCPTSPLSSRQNFRF*

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