Glyma08G01670 - SoyBase

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Report for Sequence Feature Glyma08G01670

Feature Type:	gene_model
Chromosome:	Gm08
Start:	1052800
stop:	1054858
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08G01670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G11640	AT	Annotation by Michelle Graham. TAIR10: serine racemase \| chr4:7021770-7023252 FORWARD LENGTH=331	SoyBase	E_val: 3.00E-144	ISS
GO:0006563	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-serine metabolic process	SoyBase	N/A	ISS
GO:0009069	GO-bp	Annotation by Michelle Graham. GO Biological Process: serine family amino acid metabolic process	SoyBase	N/A	ISS
GO:0070178	GO-bp	Annotation by Michelle Graham. GO Biological Process: D-serine metabolic process	SoyBase	N/A	ISS
GO:0003941	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-serine ammonia-lyase activity	SoyBase	N/A	ISS
GO:0008721	GO-mf	Annotation by Michelle Graham. GO Molecular Function: D-serine ammonia-lyase activity	SoyBase	N/A	ISS
GO:0030378	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine racemase activity	SoyBase	N/A	ISS
KOG1251	KOG	Serine racemase	JGI		ISS
PTHR10314	Panther	PYRIDOXAL-5-PHOSPHATE DEPENDENT BETA FAMILY	JGI		ISS
PTHR10314:SF36	Panther	THREONINE DEHYDRATASE-RELATED	JGI		ISS
PF00291	PFAM	Pyridoxal-phosphate dependent enzyme	JGI		ISS
UniRef100_G7LI09	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine racemase n=2 Tax=Medicago truncatula RepID=G7LI09_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337CD7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337CD7 related cluster n=1 Tax=unknown RepID=UPI0002337CD7	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma08G01670

Locus	Gene Symbol	Protein Name
	SR2	Serine racemase-2

Expression Patterns of Glyma08G01670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08G01670

Paralog	Evidence	Comments
Glyma05g37930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08G01670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g013500	Wm82.a2.v1	IGC	As supplied by JGI
Glyma08g01670	Wm82.a1.v1.1	IGC	Correspondences based on a combination of genome sequence coordinate overlap (fjoin) and sequence similarity (ungapped blastn)

References for Glyma08G01670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08G01670

Limit To All Plant Sequences

>Glyma08g01670.2   sequence type=CDS   gene model=Glyma08g01670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGAGAGCCAAATAACAAAAGGAAAATATGCTGCTGATATTTCTTCCATAAAAGAAGCACATGCCAGAATCAAATCATTGCTCTCTGACTGCTGTCAGGAAGGCAGCTCTACTTCAAATGTGAATGTTTACAAAAGGGAAGAAAAGATGATGACACACTTCCTTGTGCATCCTATGGCCATCAGTGGAGCTTTTAAATTTAGGGGAGCCTGCAATGCTGTGTTCTCTCTCAATGATGAAGATGCTTCTAAAGGGGTTGTAACACACAGCAGTGGAAACCATGCTGCAGCATTGGCTTTGGCTGCAAAACTACAGGGGATCCCTTCGTATATTGTTATCCCAAAAAATGTGCCAACTTGCAAAATTGAAAATGTAAAGTGGTATGGTGGTCAGTTTGTCTGGTCTGAAGCCTCTGTTCAATCAAGGGAAGAAGTTGCCAACAAAGTGTGGCCAGAAACCGGTGCTATCTTTATACATCCATATAATGATGGACGCAAATTAAGTGGCCAGGGTACCATATCCTTAGAGATTCTGGAACAAGCACCACAAATAGATATGCTAGTGGTACTCATAAGTGGTGGTGGTTTGATATCAGGAATAGCATTGGCTGCCAAGTCCATTAACCCAGCTATTCGTATTTTTGCCGCTGAACCTAAAGGTGCTGATGATGCAGCACAATCTAAAGCAGCTGGGAGGATAATACGATTGCCTGAGACCAATACTATAGCTGATGGGCTTCGAGTATTTCTTGGAGATTTGACATGGCCTGTTGTACAAGATCTTGTTGAGGACATTATAACTGTTGAAGACGGTGAAATAATAAAAGCCATGAAACTGTTTTTTGAAATTCTTAAGGTTGTTGTAGAACCAAGTGGAGCAATTGGCCTTGCTGCTTTTCTATCCGATACTTTCCAGAAAAATCCTGCTTGGAAGGATTGTAACCATATAGGAATTGTAATTTCAGGAGGCAATGTTGATCTGGCCTTGCTTTGGGATTCTTTGAACAAAGGAAAGTGA

Predicted protein sequences of Glyma08G01670

Limit To All Plant Sequences

>Glyma08g01670.2   sequence type=predicted peptide   gene model=Glyma08g01670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEESQITKGKYAADISSIKEAHARIKSLLSDCCQEGSSTSNVNVYKREEKMMTHFLVHPMAISGAFKFRGACNAVFSLNDEDASKGVVTHSSGNHAAALALAAKLQGIPSYIVIPKNVPTCKIENVKWYGGQFVWSEASVQSREEVANKVWPETGAIFIHPYNDGRKLSGQGTISLEILEQAPQIDMLVVLISGGGLISGIALAAKSINPAIRIFAAEPKGADDAAQSKAAGRIIRLPETNTIADGLRVFLGDLTWPVVQDLVEDIITVEDGEIIKAMKLFFEILKVVVEPSGAIGLAAFLSDTFQKNPAWKDCNHIGIVISGGNVDLALLWDSLNKGK*

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