Glyma07g40370 - SoyBase

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Report for Sequence Feature Glyma07g40370

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44625458
stop:	44629424
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g40370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G59910	AT	Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein \| chr3:22130779-22133033 REVERSE LENGTH=611	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KNT9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KNT9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9M1Y3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/ankyrin repeat protein SKIP35 n=1 Tax=Arabidopsis thaliana RepID=SKI35_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g40370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g40370

Paralog	Evidence	Comments
Glyma17g00260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g40370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g273900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g40370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g40370

Limit To All Plant Sequences

>Glyma07g40370.2   sequence type=transcript   gene model=Glyma07g40370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCATAACAACAGGTCAGGGAGCGGGTTTTCTTCTTCCACCCCTTCTAATTTCTCTCTTCTCTGAAGCTATCAGTACTTGCTTTTCATGAATTTGAAACCAGAGGCTAGAGTTCTCCTATTCAGTATCTCATGTGCTTCAAAGAATGGCTGTTAGCTTTACTGGGCTTGACATAGAAGGCAGAGACCAGACAGAAGAGAACATGACAATATGACATCTATCTAGTGGAGTAATAATTTATTTGTGATGGATGAAACTGAAGTGGAAAATCCCATATTCATGGAAATTAATTCTGAAGATAAGAGAAATGAAAATCAAGAGTTTGCATCAGAGAAAGGAGAAGGTAGCAGTGTTGTTTTCTCAAGAGAAGCACCACTTATGAGGAAAGAGTCAAGAATGTCCACTCCTTATTGTTGCAATGCTAAGAAGCTCAAATCCGGGGCTGTTACAATAGATTGTGATCTTGGAAGTAATGAGAAAAATGGGTTGGAGAAGAAACTATGTAGACAAGACAGGATTGAGTTGGGCCGGTTGTTTCAGGGTGCAGTGAGTTCCCATGACTGGGAACTTGCTGAAAGTTTGATTTTGGTTGCTGATCCGCAGACGCTCAATGATGCCTTGTGTATCACACTGGATTCCATCTGGTTCTTGAGCACAGAGCTAGAGCTTAATGGGATAATGGTATTTATCAAGAAGATCATTGCTAATGGTGCTTATGACTTCACAAGAGCTGCTCTAAGGACTTCATTCCTTGCTTCATGTGTCTCTGCTTGCCAGAGTAGAACAATGAGTCTTGCTGATACAGTTACTGTAATGGCCCAAAGGTTGCATGAACGTCTCCAGGAATGCAATGGAGATGAAGTATTGAAGGCAGAAGCTGGTGCTAAGGTTCAAAAGTTTACTGAATGGGCTCTGAAATGTATAGGCATCCATTCACGACTGCAGGATGATAGGGAAAATGTGATACACAGCTCAGCTGTTGAAATCCAGCTCCGGTTATCTGCCTTCAAGATGTTCCTCGATCTTGCTGGCAACCGCCTTACAGGGAAGGACTTCAGCGAGGCCTTTGATGCGGCTTGTTTTCCTCTTACTCTTTTCTCAAGCTCATTTGATCCAGGTTGGGCATTTGGCTTGTCAGCTACCGTGATCCAAGGGTTGCTGGGCATGCTAGTGGAGGGGGGTTCAGACAATGTCAATCAGTGTTTCTTGGAGGCTTCACGTTTTGGAAGTACAGAACTTGTGCGCATACTATTGCAGATTGCTCAAAGAAACAGCTTGGATGTTGATGTTGACTTGGCGTTGGGTTTTGCCTCCCATTATGGCAAGATAGGAACTATGGAATGCTTGGTGGAAGAGGGAAATGCCATAGCCTTTTTGGGCCCTTTGATGAGAGCTGCTGAGAGGGGTTGCATGCAAGTTGTTGAGTGGTTTGTGCAGAGGGGTTGCCGAGACATGGAACTATGCCTTGCCCTTACAGCAGCCACTTCTAGCTGCCAAGTTCACATTGCAGCTTATCTTCTGCCACACGTACCTCAGCAGGTCCTTGCAGCTCTTAGTGTTGAAATTCTTAAGGCTGCTGGTGAGCGCAGCGGTGGATCTCTTGATGGTGTAGCATTTCTTCTCCAATCTGACTTCTTAGGTGATCCTGCAGCTACTTATGCTGTTGCAGATATTATTGCTAAATCAGAGGATGAGGCTGTTGCACCTGAGTTGAAGACTTTTCTTAAGGAGCATTGGTCAGAAGGAGCTTACAAGGAGGGATTAAGGTTAGGGCAAGAGCATTACATGAACCTTGTGAGAATCATTAAATGGGGTGAGTCTCCTATTTGCTTAAGAGATCTTCCGGCCCCACTGACGGTGGCAATTGCTTACCTCCCACTTTATAGAGAGTGTGTCAAGACAGGTGGCTGCTTGTTTTCACAACGGCTTAGGGGACAACTGGTTGAAGCCGCTAGGAGGGTTGGAAATAGGGTTTTGGATGAAGTGACCCATGGTAGAGAGCTAGTGGTCGTTTTGGAACAGCATCTTCCTCACTTTTTGCTCCATCCCTCCCGCATTGCTTAGCTAGACTCGGTTGTCGATGTTATGTATTTTTTATTTCCTTTCGACACCCTTCTTTATTATGTAATGTATGCTACCATTGATAACAATTTTTATCTTGGAGTTAGCCTTTATGGTAGGATTCCCTCTTTATAGCTCAGAGTATTAAATGTGCATATTTTGTCGTAATTGTTGTCTAAAAGGATCAATCATTTATTTCTTGAATGAAAAAAATATAAAAAATGAAGGATTATTAGG

Coding sequences of Glyma07g40370

Limit To All Plant Sequences

>Glyma07g40370.1   sequence type=CDS   gene model=Glyma07g40370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAAACTGAAGTGGAAAATCCCATATTCATGGAAATTAATTCTGAAGATAAGAGAAATGAAAATCAAGAGTTTGCATCAGAGAAAGGAGAAGGTAGCAGTGTTGTTTTCTCAAGAGAAGCACCACTTATGAGGAAAGAGTCAAGAATGTCCACTCCTTATTGTTGCAATGCTAAGAAGCTCAAATCCGGGGCTGTTACAATAGATTGTGATCTTGGAAGTAATGAGAAAAATGGGTTGGAGAAGAAACTATGTAGACAAGACAGGATTGAGTTGGGCCGGTTGTTTCAGGGTGCAGTGAGTTCCCATGACTGGGAACTTGCTGAAAGTTTGATTTTGGTTGCTGATCCGCAGACGCTCAATGATGCCTTGTGTATCACACTGGATTCCATCTGGTTCTTGAGCACAGAGCTAGAGCTTAATGGGATAATGGTATTTATCAAGAAGATCATTGCTAATGGTGCTTATGACTTCACAAGAGCTGCTCTAAGGACTTCATTCCTTGCTTCATGTGTCTCTGCTTGCCAGAGTAGAACAATGAGTCTTGCTGATACAGTTACTGTAATGGCCCAAAGGTTGCATGAACGTCTCCAGGAATGCAATGGAGATGAAGTATTGAAGGCAGAAGCTGGTGCTAAGGTTCAAAAGTTTACTGAATGGGCTCTGAAATGTATAGGCATCCATTCACGACTGCAGGATGATAGGGAAAATGTGATACACAGCTCAGCTGTTGAAATCCAGCTCCGGTTATCTGCCTTCAAGATGTTCCTCGATCTTGCTGGCAACCGCCTTACAGGGAAGGACTTCAGCGAGGCCTTTGATGCGGCTTGTTTTCCTCTTACTCTTTTCTCAAGCTCATTTGATCCAGGTTGGGCATTTGGCTTGTCAGCTACCGTGATCCAAGGGTTGCTGGGCATGCTAGTGGAGGGGGGTTCAGACAATGTCAATCAGTGTTTCTTGGAGGCTTCACGTTTTGGAAGTACAGAACTTGTGCGCATACTATTGCAGATTGCTCAAAGAAACAGCTTGGATGTTGATGTTGACTTGGCGTTGGGTTTTGCCTCCCATTATGGCAAGATAGGAACTATGGAATGCTTGGTGGAAGAGGGAAATGCCATAGCCTTTTTGGGCCCTTTGATGAGAGCTGCTGAGAGGGGTTGCATGCAAGTTGTTGAGTGGTTTGTGCAGAGGGGTTGCCGAGACATGGAACTATGCCTTGCCCTTACAGCAGCCACTTCTAGCTGCCAAGTTCACATTGCAGCTTATCTTCTGCCACACGTACCTCAGCAGGTCCTTGCAGCTCTTAGTGTTGAAATTCTTAAGGCTGCTGGTGAGCGCAGCGGTGGATCTCTTGATGGTGTAGCATTTCTTCTCCAATCTGACTTCTTAGGTGATCCTGCAGCTACTTATGCTGTTGCAGATATTATTGCTAAATCAGAGGATGAGGCTGTTGCACCTGAGTTGAAGACTTTTCTTAAGGAGCATTGGTCAGAAGGAGCTTACAAGGAGGGATTAAGGTTAGGGCAAGAGCATTACATGAACCTTGTGAGAATCATTAAATGGGGTGAGTCTCCTATTTGCTTAAGAGATCTTCCGGCCCCACTGACGGTGGCAATTGCTTACCTCCCACTTTATAGAGAGTGTGTCAAGACAGGTGGCTGCTTGTTTTCACAACGGCTTAGGGGACAACTGGTTGAAGCCGCTAGGAGGGTTGGAAATAGGGTTTTGGATGAAGTGACCCATGGTAGAGAGCTAGTGGTCGTTTTGGAACAGCATCTTCCTCACTTTTTGCTCCATCCCTCCCGCATTGCTTAG

>Glyma07g40370.2   sequence type=CDS   gene model=Glyma07g40370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAAACTGAAGTGGAAAATCCCATATTCATGGAAATTAATTCTGAAGATAAGAGAAATGAAAATCAAGAGTTTGCATCAGAGAAAGGAGAAGGTAGCAGTGTTGTTTTCTCAAGAGAAGCACCACTTATGAGGAAAGAGTCAAGAATGTCCACTCCTTATTGTTGCAATGCTAAGAAGCTCAAATCCGGGGCTGTTACAATAGATTGTGATCTTGGAAGTAATGAGAAAAATGGGTTGGAGAAGAAACTATGTAGACAAGACAGGATTGAGTTGGGCCGGTTGTTTCAGGGTGCAGTGAGTTCCCATGACTGGGAACTTGCTGAAAGTTTGATTTTGGTTGCTGATCCGCAGACGCTCAATGATGCCTTGTGTATCACACTGGATTCCATCTGGTTCTTGAGCACAGAGCTAGAGCTTAATGGGATAATGGTATTTATCAAGAAGATCATTGCTAATGGTGCTTATGACTTCACAAGAGCTGCTCTAAGGACTTCATTCCTTGCTTCATGTGTCTCTGCTTGCCAGAGTAGAACAATGAGTCTTGCTGATACAGTTACTGTAATGGCCCAAAGGTTGCATGAACGTCTCCAGGAATGCAATGGAGATGAAGTATTGAAGGCAGAAGCTGGTGCTAAGGTTCAAAAGTTTACTGAATGGGCTCTGAAATGTATAGGCATCCATTCACGACTGCAGGATGATAGGGAAAATGTGATACACAGCTCAGCTGTTGAAATCCAGCTCCGGTTATCTGCCTTCAAGATGTTCCTCGATCTTGCTGGCAACCGCCTTACAGGGAAGGACTTCAGCGAGGCCTTTGATGCGGCTTGTTTTCCTCTTACTCTTTTCTCAAGCTCATTTGATCCAGGTTGGGCATTTGGCTTGTCAGCTACCGTGATCCAAGGGTTGCTGGGCATGCTAGTGGAGGGGGGTTCAGACAATGTCAATCAGTGTTTCTTGGAGGCTTCACGTTTTGGAAGTACAGAACTTGTGCGCATACTATTGCAGATTGCTCAAAGAAACAGCTTGGATGTTGATGTTGACTTGGCGTTGGGTTTTGCCTCCCATTATGGCAAGATAGGAACTATGGAATGCTTGGTGGAAGAGGGAAATGCCATAGCCTTTTTGGGCCCTTTGATGAGAGCTGCTGAGAGGGGTTGCATGCAAGTTGTTGAGTGGTTTGTGCAGAGGGGTTGCCGAGACATGGAACTATGCCTTGCCCTTACAGCAGCCACTTCTAGCTGCCAAGTTCACATTGCAGCTTATCTTCTGCCACACGTACCTCAGCAGGTCCTTGCAGCTCTTAGTGTTGAAATTCTTAAGGCTGCTGGTGAGCGCAGCGGTGGATCTCTTGATGGTGTAGCATTTCTTCTCCAATCTGACTTCTTAGGTGATCCTGCAGCTACTTATGCTGTTGCAGATATTATTGCTAAATCAGAGGATGAGGCTGTTGCACCTGAGTTGAAGACTTTTCTTAAGGAGCATTGGTCAGAAGGAGCTTACAAGGAGGGATTAAGGTTAGGGCAAGAGCATTACATGAACCTTGTGAGAATCATTAAATGGGGTGAGTCTCCTATTTGCTTAAGAGATCTTCCGGCCCCACTGACGGTGGCAATTGCTTACCTCCCACTTTATAGAGAGTGTGTCAAGACAGGTGGCTGCTTGTTTTCACAACGGCTTAGGGGACAACTGGTTGAAGCCGCTAGGAGGGTTGGAAATAGGGTTTTGGATGAAGTGACCCATGGTAGAGAGCTAGTGGTCGTTTTGGAACAGCATCTTCCTCACTTTTTGCTCCATCCCTCCCGCATTGCTTAG

Predicted protein sequences of Glyma07g40370

Limit To All Plant Sequences

>Glyma07g40370.1   sequence type=predicted peptide   gene model=Glyma07g40370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDETEVENPIFMEINSEDKRNENQEFASEKGEGSSVVFSREAPLMRKESRMSTPYCCNAKKLKSGAVTIDCDLGSNEKNGLEKKLCRQDRIELGRLFQGAVSSHDWELAESLILVADPQTLNDALCITLDSIWFLSTELELNGIMVFIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVTVMAQRLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGIHSRLQDDRENVIHSSAVEIQLRLSAFKMFLDLAGNRLTGKDFSEAFDAACFPLTLFSSSFDPGWAFGLSATVIQGLLGMLVEGGSDNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAIAFLGPLMRAAERGCMQVVEWFVQRGCRDMELCLALTAATSSCQVHIAAYLLPHVPQQVLAALSVEILKAAGERSGGSLDGVAFLLQSDFLGDPAATYAVADIIAKSEDEAVAPELKTFLKEHWSEGAYKEGLRLGQEHYMNLVRIIKWGESPICLRDLPAPLTVAIAYLPLYRECVKTGGCLFSQRLRGQLVEAARRVGNRVLDEVTHGRELVVVLEQHLPHFLLHPSRIA*

>Glyma07g40370.2   sequence type=predicted peptide   gene model=Glyma07g40370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDETEVENPIFMEINSEDKRNENQEFASEKGEGSSVVFSREAPLMRKESRMSTPYCCNAKKLKSGAVTIDCDLGSNEKNGLEKKLCRQDRIELGRLFQGAVSSHDWELAESLILVADPQTLNDALCITLDSIWFLSTELELNGIMVFIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVTVMAQRLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGIHSRLQDDRENVIHSSAVEIQLRLSAFKMFLDLAGNRLTGKDFSEAFDAACFPLTLFSSSFDPGWAFGLSATVIQGLLGMLVEGGSDNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAIAFLGPLMRAAERGCMQVVEWFVQRGCRDMELCLALTAATSSCQVHIAAYLLPHVPQQVLAALSVEILKAAGERSGGSLDGVAFLLQSDFLGDPAATYAVADIIAKSEDEAVAPELKTFLKEHWSEGAYKEGLRLGQEHYMNLVRIIKWGESPICLRDLPAPLTVAIAYLPLYRECVKTGGCLFSQRLRGQLVEAARRVGNRVLDEVTHGRELVVVLEQHLPHFLLHPSRIA*

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