SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G43900 | AT | Annotation by Michelle Graham. TAIR10: Endonuclease/exonuclease/phosphatase family protein | chr2:18178801-18183823 REVERSE LENGTH=1316 | SoyBase | E_val: 0 | ISS |
| GO:0046854 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation | SoyBase | N/A | ISS |
| GO:0046855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: inositol phosphate dephosphorylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0004445 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inositol-polyphosphate 5-phosphatase activity | SoyBase | N/A | ISS |
| GO:0052658 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inositol-1,4,5-trisphosphate 5-phosphatase activity | SoyBase | N/A | ISS |
| KOG0565 | KOG | Inositol polyphosphate 5-phosphatase and related proteins | JGI | ISS | |
| PTHR11200 | Panther | INOSITOL 5-PHOSPHATASE | JGI | ISS | |
| PTHR11200:SF24 | Panther | SYNAPTOJANIN-RELATED | JGI | ISS | |
| PF03372 | PFAM | Endonuclease/Exonuclease/phosphatase family | JGI | ISS | |
| UniRef100_G7KJV0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Type I inositol-1,4,5-trisphosphate 5-phosphatase n=1 Tax=Medicago truncatula RepID=G7KJV0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KNT8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KNT8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g40360 not represented in the dataset |
Glyma07g40360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g00295 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g273800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g40360.1 sequence type=CDS gene model=Glyma07g40360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGACCGAATCGACGAGGACGAGAAGGACAAGGAGGAGGAGGAGTCCTTGGCCGGCTTGACCTCTCTTCCACCTCACCGCAAAGCCCATTCCTACAGCCAGCAGCTGCGAGGCACCTCCACACACAAACGCCACCATCAAGTCCGGAAGCACAGTCTGGACGACAGCCGTATATCCAGTAACATCGTCGAGGCTGCTTCCTTCTACGACTGCGGCGAGGACGACGACATACTTTCCCGTTCATCCTCTACAAATAACCCTGCTGCTGACGAAGTGTACAGCGAAGGCGCCGATTCCACCACGACTCAGTATCAGCCATTGCAGGAATTCATTGGCAGCGGGGGCGGCACTGGGGTCTTTAAGCCTCCTTTCAGAGCGTCCGTTCATCCAGGGAGACCGCCATGCCTCGAGTTAAGGCCCCATCCCTTGAGGGAGACTCAGGTCGGCAAATTCCTCAGGAACATTGCTTGTACTAAAACACAGTTGTGGGCTGGCCAGGAAGGCGGGGTCAGGGTCTGGGAGATCAAAAACGCATACGACCCCGGTAAGGGTCTTGGTGGAACGGTCAGAAGGGGCGACGAGGACGCTGCGCCCTTTTGTGAATCTTCTGATACCTCTCCCACCTTATGTTTGGTTGTCGACCATGGGAATAGGTTGGTGTGGAGTGGTCACAAGGATGGCAAGATTAGGTCTTGGAGAATGGATCAGCGCTTTGCTACCCCCTTTAAGGAAGGCCTTTCTTGGCAGGCACACCGAGGCCCCGTTCTTTCCATTGTCTTAAGTTCCTATGGCGATCTCTGGTCAGGTTCTGAAGGTGGTATTATTAAGATCTGGCCTTGGGAATCCGTCGAAAAATCTCTTTCCCTCTCTCCCGAAGAAAGACACATGGCAGCCTTACTTGTCGAGAGGTCTTTCATAGACCTCAGAGCTCAAGTCACCGTTAACGGCGTCTGCAGCATATCTTCTCAAGAGGTTAAGTGTTTGCTCTGTGATCATGTTCGAGGTCGTGTCTGGTGCGCTGGCCCTCTTTCCTTTTCTCTCTGGGATGCCCGCACAAAGGAGCTTCTCAAAGTATTTAACATCGATGGTCAGGTGGAAAATCGAGTTGACATTTCATCCGTGCAGCAGCAGGATCAAGCAGTTGAAGACGAAATGAAGGTCAAGTTTGTTTCCACCTCTAAAAAGGAGAAATCCCAGGGTACTAGCTTTCTACAGCGCTCACGCAATGCCATCATGGGAGCTGCTGATGCCGTGCGTCGAGTTGCAACCAAGGGTGCTGGGGCATTTGTCGAAGATACTAAAAGAACCGAAGCCCTTGTGCAAACAGGCGATGGAATGATTTGGAGTGGATGTACCAATGGCTTACTTGTGCAATGGGATGGCACTGGAACCCGTGTGCAAGATTTTAATCGCCATCCTTGTGCTGTCCAATGCTTCTGCACTTTTGGAACACGGTTATATGTAGGCTATGTGAGTGGTATTATCCAAGTACTGGACCTAGAAGGCAATCTAATTGCAGCATGGGTTGCTCATAATGGTCCTGTGATTAAATTGGCTGTTGGATGTGATTATGTTTTTAGCTTGGCTACTCATGGTGGCCTACGGGGATGGATTATTGCATCTCCAGGTCCTGTTGACAACATGATAAGATCTGAGTTGGCCGCTAAGGAACTTATTTATACAAGGCTGCACAATGTCAGAATTTTGATTGGCACATGGAACGTCGGTCAAGGTAGAGCTTCTCAGGATTCACTTTCCTCATGGCTGGGTTCCATCGCATCAGATGTAGGCATTGTTGTCGTTGGTTTGCAAGAAGTGGAGATGGGTGCTGGTTTTCTTGCAATGTCTGCAGCAAAAGAAACTGTAGGTCTTGAAGGAAGTGCAATGGGGCAGTGGTGGCTGGATACAATAGGAAGGGCGTTAGAAGAAGGAAAAGCTTTTGAGCGTATGGGTTCTAGGCAGCTTGCTGGCTTGCTTGTATCTCTTTGGGTAAGAAAGAATCTTAGAACACATGTTGGGGACATTGATGCTGGGGCCGTCCCGTGTGGTTTTGGACGTGCAATTGGTAATAAGGGAGGAGTGGGTTTGAGAATCAGAGTGTATGACAGGATAATTTGCTTTGTGAATTGTCACTTGGCCGCACACTTGGAAGCAGTTAATCGGCGGAATGCTGATTTTGATCACATTTATCGAAATATGGTGTTCACCCGAACGTCCAGCCTACTTAATACTGCAGCTGCTGGTGTCTCTACTGCTGTTCATGTGCTTCGTGGTGCCAATGCTACAGGTGTCAGCTCTGAAGAACCAAAAGCTGATTTATCTGAAGCAGATATGGTGGTATTTTTCGGTGATTTCAACTATCGCCTTTTTGGTATATCTTATGATGAAGCCAGGGACTTTGTTTCTCAAAGATGCTTTGATTGGCTTAGAGAAAAGGATCAGCTCAGGGAGGAGATGAAAGCTGGAAAAGTTTTCCAGGGAATGCGGGAGGCACTTATCAAATTTCCTCCAACATATAAATTTGAGAGGCACAAACCAGGTTTAGGAGGGTATGATTCTGGAGAGAAAAAGCGAATTCCGGCCTGGTGTGACAGAATAATATACCGCGATACTCGGTCAGCTCCAGTTTCTGAGTGCAATTTAGACTGCCCTGTTGTGTCATCAATTTTACAGTATGATGCTTGCATGGATGTGACTGATAGTGATCACAAACCTGTCCGGTGTAAATTCAATGTAAAAATTTCTCATGTTGATAGATCAATAAGGAGAAAGGAGTTTGGGGTAGTAATGACATCAAATGAGAAAATCAGATCTATTCTTGAAGATTTATGTGATGTTCCAGAAGCCACAGTCAGCCCAAACAGTTTAGTCCTTCAAAATCTGGACACTTCATTGTTGCTTATTACAAACAGAAGTACAAAGGATAAGGCTATATATAAAATCACTTGTGAAGGCCAGTCTATAGTAAAAAATGATGGACAGGCACCTGATTATAGCCCAAGAGGTGGCTTTGGCTTTCCTAGATGGCTTGAGGTTACTCCAGCTGCGGGCATAATTAAACCTGAGCAAAGTGTAGAGGTTTCAGTTCGTCTCGAAGATCTTCATACCTCAGAAGAATCTGCAAATGGCATACCACAGAATTGGTGGAGTGAAGACACCCGAGATAAGGAAGTGATTCTGGTTGTTCATGTACAAGGCAGTTCTTCCGTCCAAACTTCATGTCAACAAATCCATGTGCGCCACTGCATGTCAGCAAAGACAGTTCGAATTGACTCAAAATCCAACAGTGCTAGAAGAAATCAAATAAGCTAA
>Glyma07g40360.1 sequence type=predicted peptide gene model=Glyma07g40360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDDRIDEDEKDKEEEESLAGLTSLPPHRKAHSYSQQLRGTSTHKRHHQVRKHSLDDSRISSNIVEAASFYDCGEDDDILSRSSSTNNPAADEVYSEGADSTTTQYQPLQEFIGSGGGTGVFKPPFRASVHPGRPPCLELRPHPLRETQVGKFLRNIACTKTQLWAGQEGGVRVWEIKNAYDPGKGLGGTVRRGDEDAAPFCESSDTSPTLCLVVDHGNRLVWSGHKDGKIRSWRMDQRFATPFKEGLSWQAHRGPVLSIVLSSYGDLWSGSEGGIIKIWPWESVEKSLSLSPEERHMAALLVERSFIDLRAQVTVNGVCSISSQEVKCLLCDHVRGRVWCAGPLSFSLWDARTKELLKVFNIDGQVENRVDISSVQQQDQAVEDEMKVKFVSTSKKEKSQGTSFLQRSRNAIMGAADAVRRVATKGAGAFVEDTKRTEALVQTGDGMIWSGCTNGLLVQWDGTGTRVQDFNRHPCAVQCFCTFGTRLYVGYVSGIIQVLDLEGNLIAAWVAHNGPVIKLAVGCDYVFSLATHGGLRGWIIASPGPVDNMIRSELAAKELIYTRLHNVRILIGTWNVGQGRASQDSLSSWLGSIASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAMGQWWLDTIGRALEEGKAFERMGSRQLAGLLVSLWVRKNLRTHVGDIDAGAVPCGFGRAIGNKGGVGLRIRVYDRIICFVNCHLAAHLEAVNRRNADFDHIYRNMVFTRTSSLLNTAAAGVSTAVHVLRGANATGVSSEEPKADLSEADMVVFFGDFNYRLFGISYDEARDFVSQRCFDWLREKDQLREEMKAGKVFQGMREALIKFPPTYKFERHKPGLGGYDSGEKKRIPAWCDRIIYRDTRSAPVSECNLDCPVVSSILQYDACMDVTDSDHKPVRCKFNVKISHVDRSIRRKEFGVVMTSNEKIRSILEDLCDVPEATVSPNSLVLQNLDTSLLLITNRSTKDKAIYKITCEGQSIVKNDGQAPDYSPRGGFGFPRWLEVTPAAGIIKPEQSVEVSVRLEDLHTSEESANGIPQNWWSEDTRDKEVILVVHVQGSSSVQTSCQQIHVRHCMSAKTVRIDSKSNSARRNQIS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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